Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6760 | 5' | -53.6 | NC_001875.2 | + | 87492 | 0.67 | 0.928649 |
Target: 5'- -gCGAccGCuGcCCGAUCGAGCUaaaGGCGu -3' miRNA: 3'- gaGCU--UGuC-GGCUAGCUUGAg--CCGCu -5' |
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6760 | 5' | -53.6 | NC_001875.2 | + | 69744 | 0.67 | 0.923205 |
Target: 5'- aUCGGGCGGCgaccugcugCGAaccaUUGAAUUUGGCGAc -3' miRNA: 3'- gAGCUUGUCG---------GCU----AGCUUGAGCCGCU- -5' |
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6760 | 5' | -53.6 | NC_001875.2 | + | 113759 | 0.67 | 0.923205 |
Target: 5'- -aCGAGCAGCCGccguaaugagGUCGcGCccgaagCGGCGGc -3' miRNA: 3'- gaGCUUGUCGGC----------UAGCuUGa-----GCCGCU- -5' |
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6760 | 5' | -53.6 | NC_001875.2 | + | 69246 | 0.67 | 0.923205 |
Target: 5'- gUCGAACGGCgcgcugggccgCGGcUCGAGCcguggCGGCGGc -3' miRNA: 3'- gAGCUUGUCG-----------GCU-AGCUUGa----GCCGCU- -5' |
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6760 | 5' | -53.6 | NC_001875.2 | + | 9122 | 0.67 | 0.923205 |
Target: 5'- aCUCGGAC-GCCG--UGGACUCGcGCGc -3' miRNA: 3'- -GAGCUUGuCGGCuaGCUUGAGC-CGCu -5' |
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6760 | 5' | -53.6 | NC_001875.2 | + | 104488 | 0.67 | 0.923205 |
Target: 5'- -cUGGugAGCCGcaugaugCGAGC-CGGCGAa -3' miRNA: 3'- gaGCUugUCGGCua-----GCUUGaGCCGCU- -5' |
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6760 | 5' | -53.6 | NC_001875.2 | + | 45415 | 0.68 | 0.913383 |
Target: 5'- gUCGAGCAuaaacguGCCGcgcagguuguuuugcGcgUCGAACUCGGCGc -3' miRNA: 3'- gAGCUUGU-------CGGC---------------U--AGCUUGAGCCGCu -5' |
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6760 | 5' | -53.6 | NC_001875.2 | + | 124510 | 0.68 | 0.911577 |
Target: 5'- -cCGGGCAGCaGGUCGcugacguccacaAACUgCGGCGAg -3' miRNA: 3'- gaGCUUGUCGgCUAGC------------UUGA-GCCGCU- -5' |
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6760 | 5' | -53.6 | NC_001875.2 | + | 82947 | 0.68 | 0.911577 |
Target: 5'- uCUCGGucgucGCGGCgGGcgCGucCUCGGCGAc -3' miRNA: 3'- -GAGCU-----UGUCGgCUa-GCuuGAGCCGCU- -5' |
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6760 | 5' | -53.6 | NC_001875.2 | + | 32781 | 0.69 | 0.881167 |
Target: 5'- cCUCGcGCGGCgUGggCGGgcgccgcgccggcaaGCUCGGCGAa -3' miRNA: 3'- -GAGCuUGUCG-GCuaGCU---------------UGAGCCGCU- -5' |
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6760 | 5' | -53.6 | NC_001875.2 | + | 117330 | 0.69 | 0.878288 |
Target: 5'- gCUUGAcacggcGCGGCgCGggCGAAC-CGGCGGg -3' miRNA: 3'- -GAGCU------UGUCG-GCuaGCUUGaGCCGCU- -5' |
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6760 | 5' | -53.6 | NC_001875.2 | + | 116859 | 0.69 | 0.870935 |
Target: 5'- aCUCGaAACAGUCGggCGugUUgGGCGAc -3' miRNA: 3'- -GAGC-UUGUCGGCuaGCuuGAgCCGCU- -5' |
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6760 | 5' | -53.6 | NC_001875.2 | + | 47011 | 0.7 | 0.8224 |
Target: 5'- --gGAGCuGCUGGUgGAGCgCGGCGAc -3' miRNA: 3'- gagCUUGuCGGCUAgCUUGaGCCGCU- -5' |
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6760 | 5' | -53.6 | NC_001875.2 | + | 61599 | 0.7 | 0.821531 |
Target: 5'- gCUCGGGC-GCCGGcggcgcuUCGGGCugugUCGGCGGc -3' miRNA: 3'- -GAGCUUGuCGGCU-------AGCUUG----AGCCGCU- -5' |
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6760 | 5' | -53.6 | NC_001875.2 | + | 55861 | 0.7 | 0.804712 |
Target: 5'- gCUUGAGCAcGCCGAcUCGA-CUaCGGCGc -3' miRNA: 3'- -GAGCUUGU-CGGCU-AGCUuGA-GCCGCu -5' |
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6760 | 5' | -53.6 | NC_001875.2 | + | 11155 | 0.7 | 0.804712 |
Target: 5'- -aUGGACGGCCGGUCGA---UGGCGc -3' miRNA: 3'- gaGCUUGUCGGCUAGCUugaGCCGCu -5' |
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6760 | 5' | -53.6 | NC_001875.2 | + | 31988 | 0.71 | 0.795623 |
Target: 5'- -gCGuACGGCCGGUuugUGAGCggCGGCGAc -3' miRNA: 3'- gaGCuUGUCGGCUA---GCUUGa-GCCGCU- -5' |
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6760 | 5' | -53.6 | NC_001875.2 | + | 113339 | 0.71 | 0.786381 |
Target: 5'- uUCGuGCGGCgGGUCGGGCgCGGCu- -3' miRNA: 3'- gAGCuUGUCGgCUAGCUUGaGCCGcu -5' |
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6760 | 5' | -53.6 | NC_001875.2 | + | 85837 | 0.71 | 0.786381 |
Target: 5'- -gUGGGCGGCCGAUCcuGCUguugugcaCGGCGAg -3' miRNA: 3'- gaGCUUGUCGGCUAGcuUGA--------GCCGCU- -5' |
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6760 | 5' | -53.6 | NC_001875.2 | + | 128950 | 0.71 | 0.757835 |
Target: 5'- -aCGAGCGGCUaagGcgUGAGCUgGGCGAg -3' miRNA: 3'- gaGCUUGUCGG---CuaGCUUGAgCCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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