miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6761 3' -48.4 NC_001875.2 + 93854 0.67 0.997487
Target:  5'- aCCAacGGUugUCgGcgcuGAGCGCGCAGGccGCc -3'
miRNA:   3'- -GGU--CUAugAGgU----UUCGCGUGUUCa-CG- -5'
6761 3' -48.4 NC_001875.2 + 45164 0.67 0.997487
Target:  5'- gCCAGGUACgucUCCAGcaccGCGUugAGGUcGUc -3'
miRNA:   3'- -GGUCUAUG---AGGUUu---CGCGugUUCA-CG- -5'
6761 3' -48.4 NC_001875.2 + 21306 0.67 0.997487
Target:  5'- gCAGAaaaGCUCaaGAAGCGC-CAGGUGg -3'
miRNA:   3'- gGUCUa--UGAGg-UUUCGCGuGUUCACg -5'
6761 3' -48.4 NC_001875.2 + 35636 0.67 0.997008
Target:  5'- gCGGAcuaUCUGgcGCaGCGCAAGUGCg -3'
miRNA:   3'- gGUCUaugAGGUuuCG-CGUGUUCACG- -5'
6761 3' -48.4 NC_001875.2 + 34886 0.67 0.997008
Target:  5'- gCCGGAaaaggACUacgagcgcgagaUCAAGGCGCGCcaguuuuuuGGGUGCg -3'
miRNA:   3'- -GGUCUa----UGA------------GGUUUCGCGUG---------UUCACG- -5'
6761 3' -48.4 NC_001875.2 + 91853 0.67 0.996455
Target:  5'- aCCAGucggccacggGCccCCAGGGCGCcuGCuGGUGCg -3'
miRNA:   3'- -GGUCua--------UGa-GGUUUCGCG--UGuUCACG- -5'
6761 3' -48.4 NC_001875.2 + 65578 0.67 0.995821
Target:  5'- gCCAGAagagcUugUCCcaguuGGCGgCGCA-GUGCg -3'
miRNA:   3'- -GGUCU-----AugAGGuu---UCGC-GUGUuCACG- -5'
6761 3' -48.4 NC_001875.2 + 60652 0.67 0.995821
Target:  5'- cCCAGccaAUGCgcguaCCAAAGUGCGCGcuGGcgGCa -3'
miRNA:   3'- -GGUC---UAUGa----GGUUUCGCGUGU--UCa-CG- -5'
6761 3' -48.4 NC_001875.2 + 34335 0.67 0.995821
Target:  5'- cCCGGcgGCUCUAuGAGCgGCACAu-UGCc -3'
miRNA:   3'- -GGUCuaUGAGGU-UUCG-CGUGUucACG- -5'
6761 3' -48.4 NC_001875.2 + 31784 0.67 0.995324
Target:  5'- cCCAGcagcaccGUcaGCUCCAcaaacagcaaaaccAGCGCGCAacAGUGCa -3'
miRNA:   3'- -GGUC-------UA--UGAGGUu-------------UCGCGUGU--UCACG- -5'
6761 3' -48.4 NC_001875.2 + 115777 0.67 0.995097
Target:  5'- gCCGuGUGCgUCCAcAGCG-ACGAGUGUu -3'
miRNA:   3'- -GGUcUAUG-AGGUuUCGCgUGUUCACG- -5'
6761 3' -48.4 NC_001875.2 + 131497 0.67 0.995097
Target:  5'- gCAGAUcgacAgUCUgcGGCGCGC-GGUGCa -3'
miRNA:   3'- gGUCUA----UgAGGuuUCGCGUGuUCACG- -5'
6761 3' -48.4 NC_001875.2 + 84325 0.68 0.994274
Target:  5'- gCCugcGGUAC-CCGGAGCG-GCGAGUGg -3'
miRNA:   3'- -GGu--CUAUGaGGUUUCGCgUGUUCACg -5'
6761 3' -48.4 NC_001875.2 + 122522 0.68 0.994186
Target:  5'- gCCGGGcagcuucgccgauUGCgUCC--GGCGCGCA-GUGCa -3'
miRNA:   3'- -GGUCU-------------AUG-AGGuuUCGCGUGUuCACG- -5'
6761 3' -48.4 NC_001875.2 + 49583 0.68 0.994007
Target:  5'- gCAGcUGCgcgCCGAcgagcgcuaccaccAGCGCGCAAGcgGCu -3'
miRNA:   3'- gGUCuAUGa--GGUU--------------UCGCGUGUUCa-CG- -5'
6761 3' -48.4 NC_001875.2 + 33213 0.68 0.993729
Target:  5'- gCCGGGgaaaaaacacgcggGCUCCGAcguGGCGCGCucuuUGCg -3'
miRNA:   3'- -GGUCUa-------------UGAGGUU---UCGCGUGuuc-ACG- -5'
6761 3' -48.4 NC_001875.2 + 25841 0.68 0.993344
Target:  5'- cCCAGAUGaagucggggCCAuGGCGCAuCAAGaGCc -3'
miRNA:   3'- -GGUCUAUga-------GGUuUCGCGU-GUUCaCG- -5'
6761 3' -48.4 NC_001875.2 + 94300 0.68 0.993244
Target:  5'- uUCuGGUGCUCCAGcagguugGGCGCguccagGCAGG-GCg -3'
miRNA:   3'- -GGuCUAUGAGGUU-------UCGCG------UGUUCaCG- -5'
6761 3' -48.4 NC_001875.2 + 23792 0.68 0.993244
Target:  5'- cCCAGGUcgccgacgugucGCUCCGcggcgucGGGCGCGCc-GUGUc -3'
miRNA:   3'- -GGUCUA------------UGAGGU-------UUCGCGUGuuCACG- -5'
6761 3' -48.4 NC_001875.2 + 122811 0.68 0.992296
Target:  5'- gCCGGcgGCUCCAAacgcaaGGCGUcCGAG-GUg -3'
miRNA:   3'- -GGUCuaUGAGGUU------UCGCGuGUUCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.