Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6763 | 5' | -58.6 | NC_001875.2 | + | 110152 | 0.68 | 0.570892 |
Target: 5'- -cGCaGCACCGCgucGCGCUcgucGGGCggcgUCg -3' miRNA: 3'- aaCGaCGUGGCGa--CGCGG----UCCGaa--AG- -5' |
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6763 | 5' | -58.6 | NC_001875.2 | + | 103223 | 0.68 | 0.581258 |
Target: 5'- -cGCUGaCGCCGgccUUGCGCucaacCAGGUUUUCg -3' miRNA: 3'- aaCGAC-GUGGC---GACGCG-----GUCCGAAAG- -5' |
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6763 | 5' | -58.6 | NC_001875.2 | + | 90773 | 0.67 | 0.602097 |
Target: 5'- gUUGUUGUugaGCCGCUGCGCCucgaacgacAGGUcgUUg -3' miRNA: 3'- -AACGACG---UGGCGACGCGG---------UCCGaaAG- -5' |
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6763 | 5' | -58.6 | NC_001875.2 | + | 26370 | 0.67 | 0.602097 |
Target: 5'- gUGCUGCACCGCgacgGgGUCAGuaUg-- -3' miRNA: 3'- aACGACGUGGCGa---CgCGGUCcgAaag -5' |
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6763 | 5' | -58.6 | NC_001875.2 | + | 96210 | 0.67 | 0.602097 |
Target: 5'- -cGCUGCGCCagauaguccGCgucgGCGUUGGGCgcgUUCa -3' miRNA: 3'- aaCGACGUGG---------CGa---CGCGGUCCGa--AAG- -5' |
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6763 | 5' | -58.6 | NC_001875.2 | + | 114304 | 0.67 | 0.62303 |
Target: 5'- cUUGUUGCGCCGCguuUGCuugaUCAGGCggUCu -3' miRNA: 3'- -AACGACGUGGCG---ACGc---GGUCCGaaAG- -5' |
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6763 | 5' | -58.6 | NC_001875.2 | + | 18467 | 0.67 | 0.643991 |
Target: 5'- -cGC-GCGCCGCUGa-CCGGGCa--- -3' miRNA: 3'- aaCGaCGUGGCGACgcGGUCCGaaag -5' |
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6763 | 5' | -58.6 | NC_001875.2 | + | 62995 | 0.67 | 0.654461 |
Target: 5'- -cGC-GCACCGCgUGCgacccguccGCCAGGCa--- -3' miRNA: 3'- aaCGaCGUGGCG-ACG---------CGGUCCGaaag -5' |
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6763 | 5' | -58.6 | NC_001875.2 | + | 2661 | 0.67 | 0.612556 |
Target: 5'- cUUGCgGCGCCgGCgGCGCCugGGGCa--- -3' miRNA: 3'- -AACGaCGUGG-CGaCGCGG--UCCGaaag -5' |
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6763 | 5' | -58.6 | NC_001875.2 | + | 110273 | 0.67 | 0.62303 |
Target: 5'- -gGCUG-GCCGCggaGCGCgCGGGCUgccccgUCg -3' miRNA: 3'- aaCGACgUGGCGa--CGCG-GUCCGAa-----AG- -5' |
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6763 | 5' | -58.6 | NC_001875.2 | + | 39201 | 0.67 | 0.633511 |
Target: 5'- -cGgUGCGCCGCUacaaccgccacGuCGUCGGGUUUUCc -3' miRNA: 3'- aaCgACGUGGCGA-----------C-GCGGUCCGAAAG- -5' |
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6763 | 5' | -58.6 | NC_001875.2 | + | 68575 | 0.67 | 0.633511 |
Target: 5'- -cGC-GCACCGCgugGCGCCGcuGGCc--- -3' miRNA: 3'- aaCGaCGUGGCGa--CGCGGU--CCGaaag -5' |
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6763 | 5' | -58.6 | NC_001875.2 | + | 73647 | 0.67 | 0.654461 |
Target: 5'- cUGCUGCgGCgGCUGCGgC-GGCUg-- -3' miRNA: 3'- aACGACG-UGgCGACGCgGuCCGAaag -5' |
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6763 | 5' | -58.6 | NC_001875.2 | + | 6950 | 0.67 | 0.643991 |
Target: 5'- gUGCgUGCGCCGCgacauCGCCAcGGCg--- -3' miRNA: 3'- aACG-ACGUGGCGac---GCGGU-CCGaaag -5' |
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6763 | 5' | -58.6 | NC_001875.2 | + | 124757 | 0.67 | 0.654461 |
Target: 5'- -cGCUGCAUguCUGCGCaCAGGCc--- -3' miRNA: 3'- aaCGACGUGgcGACGCG-GUCCGaaag -5' |
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6763 | 5' | -58.6 | NC_001875.2 | + | 61598 | 0.66 | 0.716566 |
Target: 5'- -gGCUcggGCGCCgGCgGCGCUucGGGCUgugUCg -3' miRNA: 3'- aaCGA---CGUGG-CGaCGCGG--UCCGAa--AG- -5' |
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6763 | 5' | -58.6 | NC_001875.2 | + | 114953 | 0.66 | 0.674296 |
Target: 5'- -cGCgGCGCCGCUGCGCguacgcauacaacCAGGg---- -3' miRNA: 3'- aaCGaCGUGGCGACGCG-------------GUCCgaaag -5' |
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6763 | 5' | -58.6 | NC_001875.2 | + | 57335 | 0.66 | 0.675337 |
Target: 5'- gUUGCgGCAgCGCUGCGCgC-GGCg--- -3' miRNA: 3'- -AACGaCGUgGCGACGCG-GuCCGaaag -5' |
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6763 | 5' | -58.6 | NC_001875.2 | + | 102425 | 0.66 | 0.696064 |
Target: 5'- -cGCU-CGCCGUUgccgaGCGCCGGGUUggCg -3' miRNA: 3'- aaCGAcGUGGCGA-----CGCGGUCCGAaaG- -5' |
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6763 | 5' | -58.6 | NC_001875.2 | + | 62414 | 0.66 | 0.716566 |
Target: 5'- aUUGCguggGCAagcguuugCGCUGCGCC-GGCUgcaaggUCg -3' miRNA: 3'- -AACGa---CGUg-------GCGACGCGGuCCGAa-----AG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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