Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6763 | 5' | -58.6 | NC_001875.2 | + | 53230 | 0.69 | 0.519873 |
Target: 5'- aUUGCUuaGCAgCGUgauuuuguUGUGCCGGGCUUUg -3' miRNA: 3'- -AACGA--CGUgGCG--------ACGCGGUCCGAAAg -5' |
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6763 | 5' | -58.6 | NC_001875.2 | + | 57335 | 0.66 | 0.675337 |
Target: 5'- gUUGCgGCAgCGCUGCGCgC-GGCg--- -3' miRNA: 3'- -AACGaCGUgGCGACGCG-GuCCGaaag -5' |
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6763 | 5' | -58.6 | NC_001875.2 | + | 61598 | 0.66 | 0.716566 |
Target: 5'- -gGCUcggGCGCCgGCgGCGCUucGGGCUgugUCg -3' miRNA: 3'- aaCGA---CGUGG-CGaCGCGG--UCCGAa--AG- -5' |
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6763 | 5' | -58.6 | NC_001875.2 | + | 62414 | 0.66 | 0.716566 |
Target: 5'- aUUGCguggGCAagcguuugCGCUGCGCC-GGCUgcaaggUCg -3' miRNA: 3'- -AACGa---CGUg-------GCGACGCGGuCCGAa-----AG- -5' |
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6763 | 5' | -58.6 | NC_001875.2 | + | 62995 | 0.67 | 0.654461 |
Target: 5'- -cGC-GCACCGCgUGCgacccguccGCCAGGCa--- -3' miRNA: 3'- aaCGaCGUGGCG-ACG---------CGGUCCGaaag -5' |
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6763 | 5' | -58.6 | NC_001875.2 | + | 65835 | 0.68 | 0.591662 |
Target: 5'- -aGCUGCucuACUGCaGCGCCAGcGCg--- -3' miRNA: 3'- aaCGACG---UGGCGaCGCGGUC-CGaaag -5' |
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6763 | 5' | -58.6 | NC_001875.2 | + | 68575 | 0.67 | 0.633511 |
Target: 5'- -cGC-GCACCGCgugGCGCCGcuGGCc--- -3' miRNA: 3'- aaCGaCGUGGCGa--CGCGGU--CCGaaag -5' |
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6763 | 5' | -58.6 | NC_001875.2 | + | 73647 | 0.67 | 0.654461 |
Target: 5'- cUGCUGCgGCgGCUGCGgC-GGCUg-- -3' miRNA: 3'- aACGACG-UGgCGACGCgGuCCGAaag -5' |
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6763 | 5' | -58.6 | NC_001875.2 | + | 73677 | 0.68 | 0.591662 |
Target: 5'- cUGCUGCggcgGCUGCUGCGgC-GGCUg-- -3' miRNA: 3'- aACGACG----UGGCGACGCgGuCCGAaag -5' |
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6763 | 5' | -58.6 | NC_001875.2 | + | 77379 | 0.66 | 0.664913 |
Target: 5'- cUGCcGCACaCGCUgugcgGCGCCGcGGCUa-- -3' miRNA: 3'- aACGaCGUG-GCGA-----CGCGGU-CCGAaag -5' |
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6763 | 5' | -58.6 | NC_001875.2 | + | 77478 | 0.68 | 0.560571 |
Target: 5'- -gGCgUGCGCuCGCccaacGCGCCGGGCgcgUCc -3' miRNA: 3'- aaCG-ACGUG-GCGa----CGCGGUCCGaa-AG- -5' |
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6763 | 5' | -58.6 | NC_001875.2 | + | 78405 | 0.72 | 0.339648 |
Target: 5'- gUGCUGCACgCGCUggccgugugcGCGCUGGGCa--- -3' miRNA: 3'- aACGACGUG-GCGA----------CGCGGUCCGaaag -5' |
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6763 | 5' | -58.6 | NC_001875.2 | + | 82988 | 0.69 | 0.519873 |
Target: 5'- -cGCgGCGCCGCUcGuCGCCggcGGGCUUg- -3' miRNA: 3'- aaCGaCGUGGCGA-C-GCGG---UCCGAAag -5' |
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6763 | 5' | -58.6 | NC_001875.2 | + | 90773 | 0.67 | 0.602097 |
Target: 5'- gUUGUUGUugaGCCGCUGCGCCucgaacgacAGGUcgUUg -3' miRNA: 3'- -AACGACG---UGGCGACGCGG---------UCCGaaAG- -5' |
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6763 | 5' | -58.6 | NC_001875.2 | + | 93380 | 0.69 | 0.528937 |
Target: 5'- -cGCUGCACCaauucuaGCgcGCGCCGGcacuugcuGCUUUCg -3' miRNA: 3'- aaCGACGUGG-------CGa-CGCGGUC--------CGAAAG- -5' |
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6763 | 5' | -58.6 | NC_001875.2 | + | 94631 | 1.06 | 0.001557 |
Target: 5'- cUUGCUGCACCGCUGCGCCAGGCUUUCc -3' miRNA: 3'- -AACGACGUGGCGACGCGGUCCGAAAG- -5' |
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6763 | 5' | -58.6 | NC_001875.2 | + | 96210 | 0.67 | 0.602097 |
Target: 5'- -cGCUGCGCCagauaguccGCgucgGCGUUGGGCgcgUUCa -3' miRNA: 3'- aaCGACGUGG---------CGa---CGCGGUCCGa--AAG- -5' |
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6763 | 5' | -58.6 | NC_001875.2 | + | 98601 | 0.66 | 0.696064 |
Target: 5'- -cGgaGCGCCGCgccgaaacgGCGCCcGGCg--- -3' miRNA: 3'- aaCgaCGUGGCGa--------CGCGGuCCGaaag -5' |
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6763 | 5' | -58.6 | NC_001875.2 | + | 100026 | 0.69 | 0.499957 |
Target: 5'- cUGgUGCACUGUUGCGCgCuGGUUUUg -3' miRNA: 3'- aACgACGUGGCGACGCG-GuCCGAAAg -5' |
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6763 | 5' | -58.6 | NC_001875.2 | + | 100527 | 0.69 | 0.529947 |
Target: 5'- uUUGUUGCACCGCcaGCGaCAGGUUg-- -3' miRNA: 3'- -AACGACGUGGCGa-CGCgGUCCGAaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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