miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6763 5' -58.6 NC_001875.2 + 65835 0.68 0.591662
Target:  5'- -aGCUGCucuACUGCaGCGCCAGcGCg--- -3'
miRNA:   3'- aaCGACG---UGGCGaCGCGGUC-CGaaag -5'
6763 5' -58.6 NC_001875.2 + 73677 0.68 0.591662
Target:  5'- cUGCUGCggcgGCUGCUGCGgC-GGCUg-- -3'
miRNA:   3'- aACGACG----UGGCGACGCgGuCCGAaag -5'
6763 5' -58.6 NC_001875.2 + 96210 0.67 0.602097
Target:  5'- -cGCUGCGCCagauaguccGCgucgGCGUUGGGCgcgUUCa -3'
miRNA:   3'- aaCGACGUGG---------CGa---CGCGGUCCGa--AAG- -5'
6763 5' -58.6 NC_001875.2 + 90773 0.67 0.602097
Target:  5'- gUUGUUGUugaGCCGCUGCGCCucgaacgacAGGUcgUUg -3'
miRNA:   3'- -AACGACG---UGGCGACGCGG---------UCCGaaAG- -5'
6763 5' -58.6 NC_001875.2 + 26370 0.67 0.602097
Target:  5'- gUGCUGCACCGCgacgGgGUCAGuaUg-- -3'
miRNA:   3'- aACGACGUGGCGa---CgCGGUCcgAaag -5'
6763 5' -58.6 NC_001875.2 + 2661 0.67 0.612556
Target:  5'- cUUGCgGCGCCgGCgGCGCCugGGGCa--- -3'
miRNA:   3'- -AACGaCGUGG-CGaCGCGG--UCCGaaag -5'
6763 5' -58.6 NC_001875.2 + 114304 0.67 0.62303
Target:  5'- cUUGUUGCGCCGCguuUGCuugaUCAGGCggUCu -3'
miRNA:   3'- -AACGACGUGGCG---ACGc---GGUCCGaaAG- -5'
6763 5' -58.6 NC_001875.2 + 110273 0.67 0.62303
Target:  5'- -gGCUG-GCCGCggaGCGCgCGGGCUgccccgUCg -3'
miRNA:   3'- aaCGACgUGGCGa--CGCG-GUCCGAa-----AG- -5'
6763 5' -58.6 NC_001875.2 + 39201 0.67 0.633511
Target:  5'- -cGgUGCGCCGCUacaaccgccacGuCGUCGGGUUUUCc -3'
miRNA:   3'- aaCgACGUGGCGA-----------C-GCGGUCCGAAAG- -5'
6763 5' -58.6 NC_001875.2 + 68575 0.67 0.633511
Target:  5'- -cGC-GCACCGCgugGCGCCGcuGGCc--- -3'
miRNA:   3'- aaCGaCGUGGCGa--CGCGGU--CCGaaag -5'
6763 5' -58.6 NC_001875.2 + 6950 0.67 0.643991
Target:  5'- gUGCgUGCGCCGCgacauCGCCAcGGCg--- -3'
miRNA:   3'- aACG-ACGUGGCGac---GCGGU-CCGaaag -5'
6763 5' -58.6 NC_001875.2 + 18467 0.67 0.643991
Target:  5'- -cGC-GCGCCGCUGa-CCGGGCa--- -3'
miRNA:   3'- aaCGaCGUGGCGACgcGGUCCGaaag -5'
6763 5' -58.6 NC_001875.2 + 73647 0.67 0.654461
Target:  5'- cUGCUGCgGCgGCUGCGgC-GGCUg-- -3'
miRNA:   3'- aACGACG-UGgCGACGCgGuCCGAaag -5'
6763 5' -58.6 NC_001875.2 + 124757 0.67 0.654461
Target:  5'- -cGCUGCAUguCUGCGCaCAGGCc--- -3'
miRNA:   3'- aaCGACGUGgcGACGCG-GUCCGaaag -5'
6763 5' -58.6 NC_001875.2 + 62995 0.67 0.654461
Target:  5'- -cGC-GCACCGCgUGCgacccguccGCCAGGCa--- -3'
miRNA:   3'- aaCGaCGUGGCG-ACG---------CGGUCCGaaag -5'
6763 5' -58.6 NC_001875.2 + 114278 0.66 0.664913
Target:  5'- gUGCgGCAgCCGCUcGCGCCAacGGUUa-- -3'
miRNA:   3'- aACGaCGU-GGCGA-CGCGGU--CCGAaag -5'
6763 5' -58.6 NC_001875.2 + 129160 0.66 0.664913
Target:  5'- cUGCcgagGCGCCGCaguUGCcCCAGGCg--- -3'
miRNA:   3'- aACGa---CGUGGCG---ACGcGGUCCGaaag -5'
6763 5' -58.6 NC_001875.2 + 77379 0.66 0.664913
Target:  5'- cUGCcGCACaCGCUgugcgGCGCCGcGGCUa-- -3'
miRNA:   3'- aACGaCGUG-GCGA-----CGCGGU-CCGAaag -5'
6763 5' -58.6 NC_001875.2 + 43112 0.66 0.664913
Target:  5'- uUUGCgGCagguuggaGCCGCcGCGCauccacugCAGGCUUUCc -3'
miRNA:   3'- -AACGaCG--------UGGCGaCGCG--------GUCCGAAAG- -5'
6763 5' -58.6 NC_001875.2 + 114953 0.66 0.674296
Target:  5'- -cGCgGCGCCGCUGCGCguacgcauacaacCAGGg---- -3'
miRNA:   3'- aaCGaCGUGGCGACGCG-------------GUCCgaaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.