miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6763 5' -58.6 NC_001875.2 + 94631 1.06 0.001557
Target:  5'- cUUGCUGCACCGCUGCGCCAGGCUUUCc -3'
miRNA:   3'- -AACGACGUGGCGACGCGGUCCGAAAG- -5'
6763 5' -58.6 NC_001875.2 + 43026 0.74 0.24913
Target:  5'- gUGCcgcGCGCCGCgGCGCgCGGGCUauUUCa -3'
miRNA:   3'- aACGa--CGUGGCGaCGCG-GUCCGA--AAG- -5'
6763 5' -58.6 NC_001875.2 + 78405 0.72 0.339648
Target:  5'- gUGCUGCACgCGCUggccgugugcGCGCUGGGCa--- -3'
miRNA:   3'- aACGACGUG-GCGA----------CGCGGUCCGaaag -5'
6763 5' -58.6 NC_001875.2 + 36422 0.72 0.371915
Target:  5'- -gGCcgGCGCCGCgGUGUCGGGCUg-- -3'
miRNA:   3'- aaCGa-CGUGGCGaCGCGGUCCGAaag -5'
6763 5' -58.6 NC_001875.2 + 31921 0.7 0.424083
Target:  5'- -cGCUGCACCGC-GCG-CGGGCc--- -3'
miRNA:   3'- aaCGACGUGGCGaCGCgGUCCGaaag -5'
6763 5' -58.6 NC_001875.2 + 3145 0.7 0.433195
Target:  5'- -cGCUGCGCggaCGCgGCGUCGGGCg--- -3'
miRNA:   3'- aaCGACGUG---GCGaCGCGGUCCGaaag -5'
6763 5' -58.6 NC_001875.2 + 336 0.69 0.480387
Target:  5'- -cGCUGCACCGC-GCGCCgcAGaCUgUCg -3'
miRNA:   3'- aaCGACGUGGCGaCGCGG--UCcGAaAG- -5'
6763 5' -58.6 NC_001875.2 + 100026 0.69 0.499957
Target:  5'- cUGgUGCACUGUUGCGCgCuGGUUUUg -3'
miRNA:   3'- aACgACGUGGCGACGCG-GuCCGAAAg -5'
6763 5' -58.6 NC_001875.2 + 82988 0.69 0.519873
Target:  5'- -cGCgGCGCCGCUcGuCGCCggcGGGCUUg- -3'
miRNA:   3'- aaCGaCGUGGCGA-C-GCGG---UCCGAAag -5'
6763 5' -58.6 NC_001875.2 + 53230 0.69 0.519873
Target:  5'- aUUGCUuaGCAgCGUgauuuuguUGUGCCGGGCUUUg -3'
miRNA:   3'- -AACGA--CGUgGCG--------ACGCGGUCCGAAAg -5'
6763 5' -58.6 NC_001875.2 + 93380 0.69 0.528937
Target:  5'- -cGCUGCACCaauucuaGCgcGCGCCGGcacuugcuGCUUUCg -3'
miRNA:   3'- aaCGACGUGG-------CGa-CGCGGUC--------CGAAAG- -5'
6763 5' -58.6 NC_001875.2 + 100527 0.69 0.529947
Target:  5'- uUUGUUGCACCGCcaGCGaCAGGUUg-- -3'
miRNA:   3'- -AACGACGUGGCGa-CGCgGUCCGAaag -5'
6763 5' -58.6 NC_001875.2 + 116492 0.68 0.540092
Target:  5'- gUGCUGCA-CGCgGCGUuguuCGGGCUUUg -3'
miRNA:   3'- aACGACGUgGCGaCGCG----GUCCGAAAg -5'
6763 5' -58.6 NC_001875.2 + 4765 0.68 0.540092
Target:  5'- aUGCUGgcCGCCGUUG-GCCGcGGCUUUg -3'
miRNA:   3'- aACGAC--GUGGCGACgCGGU-CCGAAAg -5'
6763 5' -58.6 NC_001875.2 + 39397 0.68 0.540092
Target:  5'- gUGCcugUGCACCGaCUGCGaCCAG-CUUUUu -3'
miRNA:   3'- aACG---ACGUGGC-GACGC-GGUCcGAAAG- -5'
6763 5' -58.6 NC_001875.2 + 77478 0.68 0.560571
Target:  5'- -gGCgUGCGCuCGCccaacGCGCCGGGCgcgUCc -3'
miRNA:   3'- aaCG-ACGUG-GCGa----CGCGGUCCGaa-AG- -5'
6763 5' -58.6 NC_001875.2 + 110152 0.68 0.570892
Target:  5'- -cGCaGCACCGCgucGCGCUcgucGGGCggcgUCg -3'
miRNA:   3'- aaCGaCGUGGCGa--CGCGG----UCCGaa--AG- -5'
6763 5' -58.6 NC_001875.2 + 113360 0.68 0.570892
Target:  5'- -gGCUGCGUCGCUGCGgCGcGGCg--- -3'
miRNA:   3'- aaCGACGUGGCGACGCgGU-CCGaaag -5'
6763 5' -58.6 NC_001875.2 + 7127 0.68 0.581258
Target:  5'- -cGCcacGCGCCGCU-UGCCAGGCg--- -3'
miRNA:   3'- aaCGa--CGUGGCGAcGCGGUCCGaaag -5'
6763 5' -58.6 NC_001875.2 + 103223 0.68 0.581258
Target:  5'- -cGCUGaCGCCGgccUUGCGCucaacCAGGUUUUCg -3'
miRNA:   3'- aaCGAC-GUGGC---GACGCG-----GUCCGAAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.