miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6763 5' -58.6 NC_001875.2 + 336 0.69 0.480387
Target:  5'- -cGCUGCACCGC-GCGCCgcAGaCUgUCg -3'
miRNA:   3'- aaCGACGUGGCGaCGCGG--UCcGAaAG- -5'
6763 5' -58.6 NC_001875.2 + 2661 0.67 0.612556
Target:  5'- cUUGCgGCGCCgGCgGCGCCugGGGCa--- -3'
miRNA:   3'- -AACGaCGUGG-CGaCGCGG--UCCGaaag -5'
6763 5' -58.6 NC_001875.2 + 3145 0.7 0.433195
Target:  5'- -cGCUGCGCggaCGCgGCGUCGGGCg--- -3'
miRNA:   3'- aaCGACGUG---GCGaCGCGGUCCGaaag -5'
6763 5' -58.6 NC_001875.2 + 4765 0.68 0.540092
Target:  5'- aUGCUGgcCGCCGUUG-GCCGcGGCUUUg -3'
miRNA:   3'- aACGAC--GUGGCGACgCGGU-CCGAAAg -5'
6763 5' -58.6 NC_001875.2 + 6950 0.67 0.643991
Target:  5'- gUGCgUGCGCCGCgacauCGCCAcGGCg--- -3'
miRNA:   3'- aACG-ACGUGGCGac---GCGGU-CCGaaag -5'
6763 5' -58.6 NC_001875.2 + 7127 0.68 0.581258
Target:  5'- -cGCcacGCGCCGCU-UGCCAGGCg--- -3'
miRNA:   3'- aaCGa--CGUGGCGAcGCGGUCCGaaag -5'
6763 5' -58.6 NC_001875.2 + 11038 0.66 0.696064
Target:  5'- cUGCUGCGCCGuUUGCGCuuguuggauacCAGcGUUUUg -3'
miRNA:   3'- aACGACGUGGC-GACGCG-----------GUC-CGAAAg -5'
6763 5' -58.6 NC_001875.2 + 18467 0.67 0.643991
Target:  5'- -cGC-GCGCCGCUGa-CCGGGCa--- -3'
miRNA:   3'- aaCGaCGUGGCGACgcGGUCCGaaag -5'
6763 5' -58.6 NC_001875.2 + 26370 0.67 0.602097
Target:  5'- gUGCUGCACCGCgacgGgGUCAGuaUg-- -3'
miRNA:   3'- aACGACGUGGCGa---CgCGGUCcgAaag -5'
6763 5' -58.6 NC_001875.2 + 31921 0.7 0.424083
Target:  5'- -cGCUGCACCGC-GCG-CGGGCc--- -3'
miRNA:   3'- aaCGACGUGGCGaCGCgGUCCGaaag -5'
6763 5' -58.6 NC_001875.2 + 36422 0.72 0.371915
Target:  5'- -gGCcgGCGCCGCgGUGUCGGGCUg-- -3'
miRNA:   3'- aaCGa-CGUGGCGaCGCGGUCCGAaag -5'
6763 5' -58.6 NC_001875.2 + 37386 0.66 0.695032
Target:  5'- -cGCUGCAguuuCCGCUGCcGCCGuucgaacGGCg--- -3'
miRNA:   3'- aaCGACGU----GGCGACG-CGGU-------CCGaaag -5'
6763 5' -58.6 NC_001875.2 + 39109 0.66 0.696064
Target:  5'- cUGCUGCACCGgUuaGCUggcGGGCa--- -3'
miRNA:   3'- aACGACGUGGCgAcgCGG---UCCGaaag -5'
6763 5' -58.6 NC_001875.2 + 39201 0.67 0.633511
Target:  5'- -cGgUGCGCCGCUacaaccgccacGuCGUCGGGUUUUCc -3'
miRNA:   3'- aaCgACGUGGCGA-----------C-GCGGUCCGAAAG- -5'
6763 5' -58.6 NC_001875.2 + 39397 0.68 0.540092
Target:  5'- gUGCcugUGCACCGaCUGCGaCCAG-CUUUUu -3'
miRNA:   3'- aACG---ACGUGGC-GACGC-GGUCcGAAAG- -5'
6763 5' -58.6 NC_001875.2 + 41442 0.66 0.675337
Target:  5'- -cGCUGCGCgCGCacagGCGCCGguugcGGCg--- -3'
miRNA:   3'- aaCGACGUG-GCGa---CGCGGU-----CCGaaag -5'
6763 5' -58.6 NC_001875.2 + 43026 0.74 0.24913
Target:  5'- gUGCcgcGCGCCGCgGCGCgCGGGCUauUUCa -3'
miRNA:   3'- aACGa--CGUGGCGaCGCG-GUCCGA--AAG- -5'
6763 5' -58.6 NC_001875.2 + 43112 0.66 0.664913
Target:  5'- uUUGCgGCagguuggaGCCGCcGCGCauccacugCAGGCUUUCc -3'
miRNA:   3'- -AACGaCG--------UGGCGaCGCG--------GUCCGAAAG- -5'
6763 5' -58.6 NC_001875.2 + 43813 0.66 0.716566
Target:  5'- -gGCUGCugCGCggGCGUuugcgCGGGCg--- -3'
miRNA:   3'- aaCGACGugGCGa-CGCG-----GUCCGaaag -5'
6763 5' -58.6 NC_001875.2 + 44543 0.66 0.685724
Target:  5'- -aGCgucGCGCgGC-GUGCCGGGCUg-- -3'
miRNA:   3'- aaCGa--CGUGgCGaCGCGGUCCGAaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.