miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6763 5' -58.6 NC_001875.2 + 37386 0.66 0.695032
Target:  5'- -cGCUGCAguuuCCGCUGCcGCCGuucgaacGGCg--- -3'
miRNA:   3'- aaCGACGU----GGCGACG-CGGU-------CCGaaag -5'
6763 5' -58.6 NC_001875.2 + 39201 0.67 0.633511
Target:  5'- -cGgUGCGCCGCUacaaccgccacGuCGUCGGGUUUUCc -3'
miRNA:   3'- aaCgACGUGGCGA-----------C-GCGGUCCGAAAG- -5'
6763 5' -58.6 NC_001875.2 + 68575 0.67 0.633511
Target:  5'- -cGC-GCACCGCgugGCGCCGcuGGCc--- -3'
miRNA:   3'- aaCGaCGUGGCGa--CGCGGU--CCGaaag -5'
6763 5' -58.6 NC_001875.2 + 6950 0.67 0.643991
Target:  5'- gUGCgUGCGCCGCgacauCGCCAcGGCg--- -3'
miRNA:   3'- aACG-ACGUGGCGac---GCGGU-CCGaaag -5'
6763 5' -58.6 NC_001875.2 + 43112 0.66 0.664913
Target:  5'- uUUGCgGCagguuggaGCCGCcGCGCauccacugCAGGCUUUCc -3'
miRNA:   3'- -AACGaCG--------UGGCGaCGCG--------GUCCGAAAG- -5'
6763 5' -58.6 NC_001875.2 + 114278 0.66 0.664913
Target:  5'- gUGCgGCAgCCGCUcGCGCCAacGGUUa-- -3'
miRNA:   3'- aACGaCGU-GGCGA-CGCGGU--CCGAaag -5'
6763 5' -58.6 NC_001875.2 + 129160 0.66 0.664913
Target:  5'- cUGCcgagGCGCCGCaguUGCcCCAGGCg--- -3'
miRNA:   3'- aACGa---CGUGGCG---ACGcGGUCCGaaag -5'
6763 5' -58.6 NC_001875.2 + 114953 0.66 0.674296
Target:  5'- -cGCgGCGCCGCUGCGCguacgcauacaacCAGGg---- -3'
miRNA:   3'- aaCGaCGUGGCGACGCG-------------GUCCgaaag -5'
6763 5' -58.6 NC_001875.2 + 57335 0.66 0.675337
Target:  5'- gUUGCgGCAgCGCUGCGCgC-GGCg--- -3'
miRNA:   3'- -AACGaCGUgGCGACGCG-GuCCGaaag -5'
6763 5' -58.6 NC_001875.2 + 110273 0.67 0.62303
Target:  5'- -gGCUG-GCCGCggaGCGCgCGGGCUgccccgUCg -3'
miRNA:   3'- aaCGACgUGGCGa--CGCG-GUCCGAa-----AG- -5'
6763 5' -58.6 NC_001875.2 + 7127 0.68 0.581258
Target:  5'- -cGCcacGCGCCGCU-UGCCAGGCg--- -3'
miRNA:   3'- aaCGa--CGUGGCGAcGCGGUCCGaaag -5'
6763 5' -58.6 NC_001875.2 + 103223 0.68 0.581258
Target:  5'- -cGCUGaCGCCGgccUUGCGCucaacCAGGUUUUCg -3'
miRNA:   3'- aaCGAC-GUGGC---GACGCG-----GUCCGAAAG- -5'
6763 5' -58.6 NC_001875.2 + 36422 0.72 0.371915
Target:  5'- -gGCcgGCGCCGCgGUGUCGGGCUg-- -3'
miRNA:   3'- aaCGa-CGUGGCGaCGCGGUCCGAaag -5'
6763 5' -58.6 NC_001875.2 + 31921 0.7 0.424083
Target:  5'- -cGCUGCACCGC-GCG-CGGGCc--- -3'
miRNA:   3'- aaCGACGUGGCGaCGCgGUCCGaaag -5'
6763 5' -58.6 NC_001875.2 + 100026 0.69 0.499957
Target:  5'- cUGgUGCACUGUUGCGCgCuGGUUUUg -3'
miRNA:   3'- aACgACGUGGCGACGCG-GuCCGAAAg -5'
6763 5' -58.6 NC_001875.2 + 53230 0.69 0.519873
Target:  5'- aUUGCUuaGCAgCGUgauuuuguUGUGCCGGGCUUUg -3'
miRNA:   3'- -AACGA--CGUgGCG--------ACGCGGUCCGAAAg -5'
6763 5' -58.6 NC_001875.2 + 39397 0.68 0.540092
Target:  5'- gUGCcugUGCACCGaCUGCGaCCAG-CUUUUu -3'
miRNA:   3'- aACG---ACGUGGC-GACGC-GGUCcGAAAG- -5'
6763 5' -58.6 NC_001875.2 + 4765 0.68 0.540092
Target:  5'- aUGCUGgcCGCCGUUG-GCCGcGGCUUUg -3'
miRNA:   3'- aACGAC--GUGGCGACgCGGU-CCGAAAg -5'
6763 5' -58.6 NC_001875.2 + 77478 0.68 0.560571
Target:  5'- -gGCgUGCGCuCGCccaacGCGCCGGGCgcgUCc -3'
miRNA:   3'- aaCG-ACGUG-GCGa----CGCGGUCCGaa-AG- -5'
6763 5' -58.6 NC_001875.2 + 110152 0.68 0.570892
Target:  5'- -cGCaGCACCGCgucGCGCUcgucGGGCggcgUCg -3'
miRNA:   3'- aaCGaCGUGGCGa--CGCGG----UCCGaa--AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.