miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6763 5' -58.6 NC_001875.2 + 94631 1.06 0.001557
Target:  5'- cUUGCUGCACCGCUGCGCCAGGCUUUCc -3'
miRNA:   3'- -AACGACGUGGCGACGCGGUCCGAAAG- -5'
6763 5' -58.6 NC_001875.2 + 62995 0.67 0.654461
Target:  5'- -cGC-GCACCGCgUGCgacccguccGCCAGGCa--- -3'
miRNA:   3'- aaCGaCGUGGCG-ACG---------CGGUCCGaaag -5'
6763 5' -58.6 NC_001875.2 + 124757 0.67 0.654461
Target:  5'- -cGCUGCAUguCUGCGCaCAGGCc--- -3'
miRNA:   3'- aaCGACGUGgcGACGCG-GUCCGaaag -5'
6763 5' -58.6 NC_001875.2 + 61598 0.66 0.716566
Target:  5'- -gGCUcggGCGCCgGCgGCGCUucGGGCUgugUCg -3'
miRNA:   3'- aaCGA---CGUGG-CGaCGCGG--UCCGAa--AG- -5'
6763 5' -58.6 NC_001875.2 + 82988 0.69 0.519873
Target:  5'- -cGCgGCGCCGCUcGuCGCCggcGGGCUUg- -3'
miRNA:   3'- aaCGaCGUGGCGA-C-GCGG---UCCGAAag -5'
6763 5' -58.6 NC_001875.2 + 93380 0.69 0.528937
Target:  5'- -cGCUGCACCaauucuaGCgcGCGCCGGcacuugcuGCUUUCg -3'
miRNA:   3'- aaCGACGUGG-------CGa-CGCGGUC--------CGAAAG- -5'
6763 5' -58.6 NC_001875.2 + 116492 0.68 0.540092
Target:  5'- gUGCUGCA-CGCgGCGUuguuCGGGCUUUg -3'
miRNA:   3'- aACGACGUgGCGaCGCG----GUCCGAAAg -5'
6763 5' -58.6 NC_001875.2 + 113360 0.68 0.570892
Target:  5'- -gGCUGCGUCGCUGCGgCGcGGCg--- -3'
miRNA:   3'- aaCGACGUGGCGACGCgGU-CCGaaag -5'
6763 5' -58.6 NC_001875.2 + 90773 0.67 0.602097
Target:  5'- gUUGUUGUugaGCCGCUGCGCCucgaacgacAGGUcgUUg -3'
miRNA:   3'- -AACGACG---UGGCGACGCGG---------UCCGaaAG- -5'
6763 5' -58.6 NC_001875.2 + 18467 0.67 0.643991
Target:  5'- -cGC-GCGCCGCUGa-CCGGGCa--- -3'
miRNA:   3'- aaCGaCGUGGCGACgcGGUCCGaaag -5'
6763 5' -58.6 NC_001875.2 + 96210 0.67 0.602097
Target:  5'- -cGCUGCGCCagauaguccGCgucgGCGUUGGGCgcgUUCa -3'
miRNA:   3'- aaCGACGUGG---------CGa---CGCGGUCCGa--AAG- -5'
6763 5' -58.6 NC_001875.2 + 73677 0.68 0.591662
Target:  5'- cUGCUGCggcgGCUGCUGCGgC-GGCUg-- -3'
miRNA:   3'- aACGACG----UGGCGACGCgGuCCGAaag -5'
6763 5' -58.6 NC_001875.2 + 78405 0.72 0.339648
Target:  5'- gUGCUGCACgCGCUggccgugugcGCGCUGGGCa--- -3'
miRNA:   3'- aACGACGUG-GCGA----------CGCGGUCCGaaag -5'
6763 5' -58.6 NC_001875.2 + 2661 0.67 0.612556
Target:  5'- cUUGCgGCGCCgGCgGCGCCugGGGCa--- -3'
miRNA:   3'- -AACGaCGUGG-CGaCGCGG--UCCGaaag -5'
6763 5' -58.6 NC_001875.2 + 3145 0.7 0.433195
Target:  5'- -cGCUGCGCggaCGCgGCGUCGGGCg--- -3'
miRNA:   3'- aaCGACGUG---GCGaCGCGGUCCGaaag -5'
6763 5' -58.6 NC_001875.2 + 65835 0.68 0.591662
Target:  5'- -aGCUGCucuACUGCaGCGCCAGcGCg--- -3'
miRNA:   3'- aaCGACG---UGGCGaCGCGGUC-CGaaag -5'
6763 5' -58.6 NC_001875.2 + 114304 0.67 0.62303
Target:  5'- cUUGUUGCGCCGCguuUGCuugaUCAGGCggUCu -3'
miRNA:   3'- -AACGACGUGGCG---ACGc---GGUCCGaaAG- -5'
6763 5' -58.6 NC_001875.2 + 73647 0.67 0.654461
Target:  5'- cUGCUGCgGCgGCUGCGgC-GGCUg-- -3'
miRNA:   3'- aACGACG-UGgCGACGCgGuCCGAaag -5'
6763 5' -58.6 NC_001875.2 + 336 0.69 0.480387
Target:  5'- -cGCUGCACCGC-GCGCCgcAGaCUgUCg -3'
miRNA:   3'- aaCGACGUGGCGaCGCGG--UCcGAaAG- -5'
6763 5' -58.6 NC_001875.2 + 100527 0.69 0.529947
Target:  5'- uUUGUUGCACCGCcaGCGaCAGGUUg-- -3'
miRNA:   3'- -AACGACGUGGCGa-CGCgGUCCGAaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.