miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6763 5' -58.6 NC_001875.2 + 129160 0.66 0.664913
Target:  5'- cUGCcgagGCGCCGCaguUGCcCCAGGCg--- -3'
miRNA:   3'- aACGa---CGUGGCG---ACGcGGUCCGaaag -5'
6763 5' -58.6 NC_001875.2 + 125439 0.66 0.696064
Target:  5'- cUUGCUGUAcaaaaagauCCGC-GUGCCGGGCc--- -3'
miRNA:   3'- -AACGACGU---------GGCGaCGCGGUCCGaaag -5'
6763 5' -58.6 NC_001875.2 + 124757 0.67 0.654461
Target:  5'- -cGCUGCAUguCUGCGCaCAGGCc--- -3'
miRNA:   3'- aaCGACGUGgcGACGCG-GUCCGaaag -5'
6763 5' -58.6 NC_001875.2 + 116492 0.68 0.540092
Target:  5'- gUGCUGCA-CGCgGCGUuguuCGGGCUUUg -3'
miRNA:   3'- aACGACGUgGCGaCGCG----GUCCGAAAg -5'
6763 5' -58.6 NC_001875.2 + 114953 0.66 0.674296
Target:  5'- -cGCgGCGCCGCUGCGCguacgcauacaacCAGGg---- -3'
miRNA:   3'- aaCGaCGUGGCGACGCG-------------GUCCgaaag -5'
6763 5' -58.6 NC_001875.2 + 114304 0.67 0.62303
Target:  5'- cUUGUUGCGCCGCguuUGCuugaUCAGGCggUCu -3'
miRNA:   3'- -AACGACGUGGCG---ACGc---GGUCCGaaAG- -5'
6763 5' -58.6 NC_001875.2 + 114278 0.66 0.664913
Target:  5'- gUGCgGCAgCCGCUcGCGCCAacGGUUa-- -3'
miRNA:   3'- aACGaCGU-GGCGA-CGCGGU--CCGAaag -5'
6763 5' -58.6 NC_001875.2 + 113360 0.68 0.570892
Target:  5'- -gGCUGCGUCGCUGCGgCGcGGCg--- -3'
miRNA:   3'- aaCGACGUGGCGACGCgGU-CCGaaag -5'
6763 5' -58.6 NC_001875.2 + 110273 0.67 0.62303
Target:  5'- -gGCUG-GCCGCggaGCGCgCGGGCUgccccgUCg -3'
miRNA:   3'- aaCGACgUGGCGa--CGCG-GUCCGAa-----AG- -5'
6763 5' -58.6 NC_001875.2 + 110152 0.68 0.570892
Target:  5'- -cGCaGCACCGCgucGCGCUcgucGGGCggcgUCg -3'
miRNA:   3'- aaCGaCGUGGCGa--CGCGG----UCCGaa--AG- -5'
6763 5' -58.6 NC_001875.2 + 103223 0.68 0.581258
Target:  5'- -cGCUGaCGCCGgccUUGCGCucaacCAGGUUUUCg -3'
miRNA:   3'- aaCGAC-GUGGC---GACGCG-----GUCCGAAAG- -5'
6763 5' -58.6 NC_001875.2 + 102425 0.66 0.696064
Target:  5'- -cGCU-CGCCGUUgccgaGCGCCGGGUUggCg -3'
miRNA:   3'- aaCGAcGUGGCGA-----CGCGGUCCGAaaG- -5'
6763 5' -58.6 NC_001875.2 + 100527 0.69 0.529947
Target:  5'- uUUGUUGCACCGCcaGCGaCAGGUUg-- -3'
miRNA:   3'- -AACGACGUGGCGa-CGCgGUCCGAaag -5'
6763 5' -58.6 NC_001875.2 + 100026 0.69 0.499957
Target:  5'- cUGgUGCACUGUUGCGCgCuGGUUUUg -3'
miRNA:   3'- aACgACGUGGCGACGCG-GuCCGAAAg -5'
6763 5' -58.6 NC_001875.2 + 98601 0.66 0.696064
Target:  5'- -cGgaGCGCCGCgccgaaacgGCGCCcGGCg--- -3'
miRNA:   3'- aaCgaCGUGGCGa--------CGCGGuCCGaaag -5'
6763 5' -58.6 NC_001875.2 + 96210 0.67 0.602097
Target:  5'- -cGCUGCGCCagauaguccGCgucgGCGUUGGGCgcgUUCa -3'
miRNA:   3'- aaCGACGUGG---------CGa---CGCGGUCCGa--AAG- -5'
6763 5' -58.6 NC_001875.2 + 94631 1.06 0.001557
Target:  5'- cUUGCUGCACCGCUGCGCCAGGCUUUCc -3'
miRNA:   3'- -AACGACGUGGCGACGCGGUCCGAAAG- -5'
6763 5' -58.6 NC_001875.2 + 93380 0.69 0.528937
Target:  5'- -cGCUGCACCaauucuaGCgcGCGCCGGcacuugcuGCUUUCg -3'
miRNA:   3'- aaCGACGUGG-------CGa-CGCGGUC--------CGAAAG- -5'
6763 5' -58.6 NC_001875.2 + 90773 0.67 0.602097
Target:  5'- gUUGUUGUugaGCCGCUGCGCCucgaacgacAGGUcgUUg -3'
miRNA:   3'- -AACGACG---UGGCGACGCGG---------UCCGaaAG- -5'
6763 5' -58.6 NC_001875.2 + 82988 0.69 0.519873
Target:  5'- -cGCgGCGCCGCUcGuCGCCggcGGGCUUg- -3'
miRNA:   3'- aaCGaCGUGGCGA-C-GCGG---UCCGAAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.