miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6764 3' -55.3 NC_001875.2 + 94127 1.06 0.003525
Target:  5'- aAUGGUUGAGCAGCGACAACGGGCACAc -3'
miRNA:   3'- -UACCAACUCGUCGCUGUUGCCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 63719 0.79 0.248039
Target:  5'- -cGGUc--GCGGCGACGGCGGGCGCu -3'
miRNA:   3'- uaCCAacuCGUCGCUGUUGCCCGUGu -5'
6764 3' -55.3 NC_001875.2 + 31997 0.77 0.323549
Target:  5'- -cGGUuugUGAGCGGCGGCGACGcaGCGCAc -3'
miRNA:   3'- uaCCA---ACUCGUCGCUGUUGCc-CGUGU- -5'
6764 3' -55.3 NC_001875.2 + 15759 0.76 0.338992
Target:  5'- uGUGGggGAG-GGCGACAcguauguggucaACGGGCACAa -3'
miRNA:   3'- -UACCaaCUCgUCGCUGU------------UGCCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 84790 0.75 0.379897
Target:  5'- -aGGUUGAGCAGCccguuguCGGGCACGc -3'
miRNA:   3'- uaCCAACUCGUCGcuguu--GCCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 62471 0.73 0.480695
Target:  5'- -cGGUgGA-CGGCGcGCAGCGGGCGCAc -3'
miRNA:   3'- uaCCAaCUcGUCGC-UGUUGCCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 74100 0.73 0.490509
Target:  5'- --aGUUGGGCAGCGACGccguGCuGGCGCGu -3'
miRNA:   3'- uacCAACUCGUCGCUGU----UGcCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 101084 0.73 0.510408
Target:  5'- cGUGGgcgGAGCuauacAGCGACAGCGuGCACGu -3'
miRNA:   3'- -UACCaa-CUCG-----UCGCUGUUGCcCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 88133 0.72 0.529618
Target:  5'- -cGGUgcUGAGCGGCGcCAAaauugugUGGGCGCAc -3'
miRNA:   3'- uaCCA--ACUCGUCGCuGUU-------GCCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 35488 0.72 0.551148
Target:  5'- uUGGccgUGAGCGGCaugacaacugccGGCAACGGGCGg- -3'
miRNA:   3'- uACCa--ACUCGUCG------------CUGUUGCCCGUgu -5'
6764 3' -55.3 NC_001875.2 + 3044 0.7 0.64554
Target:  5'- --cGUUGGGCAGCGcguaagaggcgcGCAGCGGcGCGCc -3'
miRNA:   3'- uacCAACUCGUCGC------------UGUUGCC-CGUGu -5'
6764 3' -55.3 NC_001875.2 + 117321 0.7 0.656083
Target:  5'- --uGUUGAGCGGCuuGACAcgGCGcGGCGCGg -3'
miRNA:   3'- uacCAACUCGUCG--CUGU--UGC-CCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 23164 0.7 0.656083
Target:  5'- -cGGcugcGGGCacGGCGGCuGCGGGCACGg -3'
miRNA:   3'- uaCCaa--CUCG--UCGCUGuUGCCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 113327 0.7 0.666607
Target:  5'- cAUGG-UGGGCuuuucguGCGGCGgguCGGGCGCGg -3'
miRNA:   3'- -UACCaACUCGu------CGCUGUu--GCCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 767 0.7 0.666607
Target:  5'- cAUGG---GGCAGCuGACGGCGGcGCGCGg -3'
miRNA:   3'- -UACCaacUCGUCG-CUGUUGCC-CGUGU- -5'
6764 3' -55.3 NC_001875.2 + 84439 0.7 0.677101
Target:  5'- -cGGaucggGAGCGGCGGCGGCGGuagaccaugauGCGCGu -3'
miRNA:   3'- uaCCaa---CUCGUCGCUGUUGCC-----------CGUGU- -5'
6764 3' -55.3 NC_001875.2 + 47040 0.7 0.687555
Target:  5'- aGUGG-UGGGCGugccCGACAACGGGCugcuCAa -3'
miRNA:   3'- -UACCaACUCGUc---GCUGUUGCCCGu---GU- -5'
6764 3' -55.3 NC_001875.2 + 91446 0.69 0.708308
Target:  5'- ----cUGAGCGGCGGCGcguGGGCGCGc -3'
miRNA:   3'- uaccaACUCGUCGCUGUug-CCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 121428 0.69 0.728786
Target:  5'- --uGUUGGGUAGUG-CAGCGGGUGCc -3'
miRNA:   3'- uacCAACUCGUCGCuGUUGCCCGUGu -5'
6764 3' -55.3 NC_001875.2 + 93746 0.69 0.732841
Target:  5'- -cGGUUGAGCAuGCGccACAcacccacguugucgaACGGGCgGCAg -3'
miRNA:   3'- uaCCAACUCGU-CGC--UGU---------------UGCCCG-UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.