miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6764 3' -55.3 NC_001875.2 + 1 0.67 0.832911
Target:  5'- cGUGGgc--GCGGCGACAGgGGgguGCACAa -3'
miRNA:   3'- -UACCaacuCGUCGCUGUUgCC---CGUGU- -5'
6764 3' -55.3 NC_001875.2 + 767 0.7 0.666607
Target:  5'- cAUGG---GGCAGCuGACGGCGGcGCGCGg -3'
miRNA:   3'- -UACCaacUCGUCG-CUGUUGCC-CGUGU- -5'
6764 3' -55.3 NC_001875.2 + 1031 0.68 0.75881
Target:  5'- cGUGGcgGGGCccgaGGCGcACAGCguuGGGCGCAa -3'
miRNA:   3'- -UACCaaCUCG----UCGC-UGUUG---CCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 3044 0.7 0.64554
Target:  5'- --cGUUGGGCAGCGcguaagaggcgcGCAGCGGcGCGCc -3'
miRNA:   3'- uacCAACUCGUCGC------------UGUUGCC-CGUGu -5'
6764 3' -55.3 NC_001875.2 + 3205 0.66 0.894709
Target:  5'- -aGGUU--GCGGCGGCGGuuggauggcgUGGGCGCGu -3'
miRNA:   3'- uaCCAAcuCGUCGCUGUU----------GCCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 5922 0.66 0.894709
Target:  5'- cAUGGcgUUGGGUAGCGccGCGcaggUGGGCGCGg -3'
miRNA:   3'- -UACC--AACUCGUCGC--UGUu---GCCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 6675 0.67 0.849672
Target:  5'- -cGGUaaaUGAaCuuGGCGACGACGGcGCACGc -3'
miRNA:   3'- uaCCA---ACUcG--UCGCUGUUGCC-CGUGU- -5'
6764 3' -55.3 NC_001875.2 + 12963 0.66 0.873222
Target:  5'- -aGGUUG-GUcGCGAC-ACGGGCGu- -3'
miRNA:   3'- uaCCAACuCGuCGCUGuUGCCCGUgu -5'
6764 3' -55.3 NC_001875.2 + 15759 0.76 0.338992
Target:  5'- uGUGGggGAG-GGCGACAcguauguggucaACGGGCACAa -3'
miRNA:   3'- -UACCaaCUCgUCGCUGU------------UGCCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 23164 0.7 0.656083
Target:  5'- -cGGcugcGGGCacGGCGGCuGCGGGCACGg -3'
miRNA:   3'- uaCCaa--CUCG--UCGCUGuUGCCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 23236 0.67 0.832911
Target:  5'- cGUGGUU-AGCAGCuGgucggagaacaGCGACGGGCAg- -3'
miRNA:   3'- -UACCAAcUCGUCG-C-----------UGUUGCCCGUgu -5'
6764 3' -55.3 NC_001875.2 + 28826 0.66 0.856944
Target:  5'- -cGGUgaccgucaGGGUGGCcgacacgGACGGCGGGCACu -3'
miRNA:   3'- uaCCAa-------CUCGUCG-------CUGUUGCCCGUGu -5'
6764 3' -55.3 NC_001875.2 + 29791 0.67 0.827728
Target:  5'- gGUGGacGGGCgugucaggcuacgccGGCGACAAauauuucuCGGGCACGg -3'
miRNA:   3'- -UACCaaCUCG---------------UCGCUGUU--------GCCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 31997 0.77 0.323549
Target:  5'- -cGGUuugUGAGCGGCGGCGACGcaGCGCAc -3'
miRNA:   3'- uaCCA---ACUCGUCGCUGUUGCc-CGUGU- -5'
6764 3' -55.3 NC_001875.2 + 32784 0.68 0.778247
Target:  5'- -----cGcGCGGCGugGGCGGGCGCc -3'
miRNA:   3'- uaccaaCuCGUCGCugUUGCCCGUGu -5'
6764 3' -55.3 NC_001875.2 + 35488 0.72 0.551148
Target:  5'- uUGGccgUGAGCGGCaugacaacugccGGCAACGGGCGg- -3'
miRNA:   3'- uACCa--ACUCGUCG------------CUGUUGCCCGUgu -5'
6764 3' -55.3 NC_001875.2 + 37079 0.67 0.852925
Target:  5'- cUGuGUUuGGCGGaCGACAccgccgcguggguguGCGGGCGCGg -3'
miRNA:   3'- uAC-CAAcUCGUC-GCUGU---------------UGCCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 38686 0.68 0.75881
Target:  5'- -----aGuGCGGCGGCGugGGGCugAa -3'
miRNA:   3'- uaccaaCuCGUCGCUGUugCCCGugU- -5'
6764 3' -55.3 NC_001875.2 + 40273 0.66 0.855343
Target:  5'- -cGGUcgcguuuccguacgUG-GCGGCgGGCAACGGGCuGCAc -3'
miRNA:   3'- uaCCA--------------ACuCGUCG-CUGUUGCCCG-UGU- -5'
6764 3' -55.3 NC_001875.2 + 42191 0.66 0.880621
Target:  5'- -cGGUUGGGCguuucaaauAGCGcGCGGC-GGCACGc -3'
miRNA:   3'- uaCCAACUCG---------UCGC-UGUUGcCCGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.