miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6764 3' -55.3 NC_001875.2 + 131741 0.68 0.778247
Target:  5'- aAUGGUgcauUGGGcCGGCGGCGgauCGGGCGg- -3'
miRNA:   3'- -UACCA----ACUC-GUCGCUGUu--GCCCGUgu -5'
6764 3' -55.3 NC_001875.2 + 130920 0.66 0.887785
Target:  5'- -cGGUcacGGCAGUGGCGGCGGuuuGCGCc -3'
miRNA:   3'- uaCCAac-UCGUCGCUGUUGCC---CGUGu -5'
6764 3' -55.3 NC_001875.2 + 130102 0.66 0.880621
Target:  5'- -cGGaaauGGCGGCGGCGGC-GGCGCGa -3'
miRNA:   3'- uaCCaac-UCGUCGCUGUUGcCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 130058 0.66 0.880621
Target:  5'- aAUGGc--GGCGGCGGCGGC-GGCAUg -3'
miRNA:   3'- -UACCaacUCGUCGCUGUUGcCCGUGu -5'
6764 3' -55.3 NC_001875.2 + 129967 0.66 0.857741
Target:  5'- -cGGcgGcGGCGGCGGCGGCGgcGGCAUg -3'
miRNA:   3'- uaCCaaC-UCGUCGCUGUUGC--CCGUGu -5'
6764 3' -55.3 NC_001875.2 + 127453 0.66 0.865594
Target:  5'- gAUGGccgauUUGAGCAGCGcGCcACGcGGCAaCAu -3'
miRNA:   3'- -UACC-----AACUCGUCGC-UGuUGC-CCGU-GU- -5'
6764 3' -55.3 NC_001875.2 + 121948 0.66 0.878426
Target:  5'- uGUGGUgcgcgcGGCAGCGuugcaGCGuauucaaaaagcugGCGGGCACGu -3'
miRNA:   3'- -UACCAac----UCGUCGC-----UGU--------------UGCCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 121428 0.69 0.728786
Target:  5'- --uGUUGGGUAGUG-CAGCGGGUGCc -3'
miRNA:   3'- uacCAACUCGUCGCuGUUGCCCGUGu -5'
6764 3' -55.3 NC_001875.2 + 118198 0.67 0.832911
Target:  5'- uUGuGUUGAGCGGCGGC-GC-GGCAa- -3'
miRNA:   3'- uAC-CAACUCGUCGCUGuUGcCCGUgu -5'
6764 3' -55.3 NC_001875.2 + 117872 0.66 0.887785
Target:  5'- -aGGUUGAGCAGCGuuggcCAGCuuaGGCu-- -3'
miRNA:   3'- uaCCAACUCGUCGCu----GUUGc--CCGugu -5'
6764 3' -55.3 NC_001875.2 + 117321 0.7 0.656083
Target:  5'- --uGUUGAGCGGCuuGACAcgGCGcGGCGCGg -3'
miRNA:   3'- uacCAACUCGUCG--CUGU--UGC-CCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 115434 0.66 0.87916
Target:  5'- -cGGUUuGGCGGCGACgaacaccgcaccuAccgcguugagcuaGCGGGCGCGg -3'
miRNA:   3'- uaCCAAcUCGUCGCUG-------------U-------------UGCCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 113327 0.7 0.666607
Target:  5'- cAUGG-UGGGCuuuucguGCGGCGgguCGGGCGCGg -3'
miRNA:   3'- -UACCaACUCGu------CGCUGUu--GCCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 111779 0.67 0.815373
Target:  5'- cUGGUgucGCuGGUGACGGCGGuGCACGc -3'
miRNA:   3'- uACCAacuCG-UCGCUGUUGCC-CGUGU- -5'
6764 3' -55.3 NC_001875.2 + 109831 0.69 0.747911
Target:  5'- uGUGGaUUGGGCAGUGcCGGCGGauuugcuGCGCGc -3'
miRNA:   3'- -UACC-AACUCGUCGCuGUUGCC-------CGUGU- -5'
6764 3' -55.3 NC_001875.2 + 108747 0.67 0.815373
Target:  5'- uUGGcgGGGCAGCuGC-ACGcGGCGCGg -3'
miRNA:   3'- uACCaaCUCGUCGcUGuUGC-CCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 108237 0.66 0.894709
Target:  5'- uUGGacGAGC-GCGuCAACGGGCuGCu -3'
miRNA:   3'- uACCaaCUCGuCGCuGUUGCCCG-UGu -5'
6764 3' -55.3 NC_001875.2 + 106627 0.67 0.815373
Target:  5'- cUGGUUuGGCGGCaaaacggugucGACGGCGGuGUACAu -3'
miRNA:   3'- uACCAAcUCGUCG-----------CUGUUGCC-CGUGU- -5'
6764 3' -55.3 NC_001875.2 + 106020 0.66 0.857741
Target:  5'- cUGGgcGuuGCAGUGcuCGGCGGGCGCc -3'
miRNA:   3'- uACCaaCu-CGUCGCu-GUUGCCCGUGu -5'
6764 3' -55.3 NC_001875.2 + 104949 0.67 0.815373
Target:  5'- --uGUUGuAGCAguugcucguguGCGGCGGCGGGCugGu -3'
miRNA:   3'- uacCAAC-UCGU-----------CGCUGUUGCCCGugU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.