miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6764 3' -55.3 NC_001875.2 + 100781 0.67 0.849672
Target:  5'- -aGGUUGAGCGGCacaguuuccGACGuACGGcCGCGc -3'
miRNA:   3'- uaCCAACUCGUCG---------CUGU-UGCCcGUGU- -5'
6764 3' -55.3 NC_001875.2 + 38686 0.68 0.75881
Target:  5'- -----aGuGCGGCGGCGugGGGCugAa -3'
miRNA:   3'- uaccaaCuCGUCGCUGUugCCCGugU- -5'
6764 3' -55.3 NC_001875.2 + 1031 0.68 0.75881
Target:  5'- cGUGGcgGGGCccgaGGCGcACAGCguuGGGCGCAa -3'
miRNA:   3'- -UACCaaCUCG----UCGC-UGUUG---CCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 67930 0.68 0.768593
Target:  5'- -gGGUucaUGAuGCGGCGGCGccACGGcGCGCu -3'
miRNA:   3'- uaCCA---ACU-CGUCGCUGU--UGCC-CGUGu -5'
6764 3' -55.3 NC_001875.2 + 32784 0.68 0.778247
Target:  5'- -----cGcGCGGCGugGGCGGGCGCc -3'
miRNA:   3'- uaccaaCuCGUCGCugUUGCCCGUGu -5'
6764 3' -55.3 NC_001875.2 + 85290 0.68 0.787762
Target:  5'- -cGGuUUGcGCgGGCGGC-GCGGGCGCGg -3'
miRNA:   3'- uaCC-AACuCG-UCGCUGuUGCCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 68549 0.68 0.797127
Target:  5'- -cGGUUugccgccGCGGCGGCGGCGGucGCGCAc -3'
miRNA:   3'- uaCCAAcu-----CGUCGCUGUUGCC--CGUGU- -5'
6764 3' -55.3 NC_001875.2 + 111779 0.67 0.815373
Target:  5'- cUGGUgucGCuGGUGACGGCGGuGCACGc -3'
miRNA:   3'- uACCAacuCG-UCGCUGUUGCC-CGUGU- -5'
6764 3' -55.3 NC_001875.2 + 104949 0.67 0.815373
Target:  5'- --uGUUGuAGCAguugcucguguGCGGCGGCGGGCugGu -3'
miRNA:   3'- uacCAAC-UCGU-----------CGCUGUUGCCCGugU- -5'
6764 3' -55.3 NC_001875.2 + 109831 0.69 0.747911
Target:  5'- uGUGGaUUGGGCAGUGcCGGCGGauuugcuGCGCGc -3'
miRNA:   3'- -UACC-AACUCGUCGCuGUUGCC-------CGUGU- -5'
6764 3' -55.3 NC_001875.2 + 70177 0.69 0.744916
Target:  5'- -gGGUUuggcgcagcgagccGGGCGGCGACGGCgaccacuGGGCGCc -3'
miRNA:   3'- uaCCAA--------------CUCGUCGCUGUUG-------CCCGUGu -5'
6764 3' -55.3 NC_001875.2 + 69549 0.69 0.735873
Target:  5'- cGUGGUgggucuugcgacuaUGAugGCGGaccuGACAACGGGCGCu -3'
miRNA:   3'- -UACCA--------------ACU--CGUCg---CUGUUGCCCGUGu -5'
6764 3' -55.3 NC_001875.2 + 31997 0.77 0.323549
Target:  5'- -cGGUuugUGAGCGGCGGCGACGcaGCGCAc -3'
miRNA:   3'- uaCCA---ACUCGUCGCUGUUGCc-CGUGU- -5'
6764 3' -55.3 NC_001875.2 + 15759 0.76 0.338992
Target:  5'- uGUGGggGAG-GGCGACAcguauguggucaACGGGCACAa -3'
miRNA:   3'- -UACCaaCUCgUCGCUGU------------UGCCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 62471 0.73 0.480695
Target:  5'- -cGGUgGA-CGGCGcGCAGCGGGCGCAc -3'
miRNA:   3'- uaCCAaCUcGUCGC-UGUUGCCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 74100 0.73 0.490509
Target:  5'- --aGUUGGGCAGCGACGccguGCuGGCGCGu -3'
miRNA:   3'- uacCAACUCGUCGCUGU----UGcCCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 117321 0.7 0.656083
Target:  5'- --uGUUGAGCGGCuuGACAcgGCGcGGCGCGg -3'
miRNA:   3'- uacCAACUCGUCG--CUGU--UGC-CCGUGU- -5'
6764 3' -55.3 NC_001875.2 + 84439 0.7 0.677101
Target:  5'- -cGGaucggGAGCGGCGGCGGCGGuagaccaugauGCGCGu -3'
miRNA:   3'- uaCCaa---CUCGUCGCUGUUGCC-----------CGUGU- -5'
6764 3' -55.3 NC_001875.2 + 47040 0.7 0.687555
Target:  5'- aGUGG-UGGGCGugccCGACAACGGGCugcuCAa -3'
miRNA:   3'- -UACCaACUCGUc---GCUGUUGCCCGu---GU- -5'
6764 3' -55.3 NC_001875.2 + 91446 0.69 0.708308
Target:  5'- ----cUGAGCGGCGGCGcguGGGCGCGc -3'
miRNA:   3'- uaccaACUCGUCGCUGUug-CCCGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.