miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6768 3' -57.7 NC_001875.2 + 110635 0.68 0.720436
Target:  5'- cCCGUuuUGUUgGCCGCCaaACGUugcgaGCGGGAGc -3'
miRNA:   3'- -GGCA--ACGGgCGGCGG--UGCA-----UGCCUUU- -5'
6768 3' -57.7 NC_001875.2 + 49388 0.68 0.720436
Target:  5'- aCCGUU-CCUGCCGCCGCGaACu---- -3'
miRNA:   3'- -GGCAAcGGGCGGCGGUGCaUGccuuu -5'
6768 3' -57.7 NC_001875.2 + 61895 0.68 0.720436
Target:  5'- gCCGUgGCCCGacacgCGCCGUGUcacgGCGGAAAc -3'
miRNA:   3'- -GGCAaCGGGCg----GCGGUGCA----UGCCUUU- -5'
6768 3' -57.7 NC_001875.2 + 1733 0.68 0.720436
Target:  5'- aCCGgucGCgCCGCCGCCGCcgccauuuccGUcgGCGGAu- -3'
miRNA:   3'- -GGCaa-CG-GGCGGCGGUG----------CA--UGCCUuu -5'
6768 3' -57.7 NC_001875.2 + 62558 0.67 0.748682
Target:  5'- aCGUUGUgcggguggacuugCCGCCGCCACGgcucgagccGCGGc-- -3'
miRNA:   3'- gGCAACG-------------GGCGGCGGUGCa--------UGCCuuu -5'
6768 3' -57.7 NC_001875.2 + 99059 0.67 0.749642
Target:  5'- gCGgcGCCCGCCcacGCCGCGcgaGGAc- -3'
miRNA:   3'- gGCaaCGGGCGG---CGGUGCaugCCUuu -5'
6768 3' -57.7 NC_001875.2 + 62715 0.67 0.749642
Target:  5'- aCGUUGCaaaCGCUGCUGCGUgugcaACGGcAAGa -3'
miRNA:   3'- gGCAACGg--GCGGCGGUGCA-----UGCC-UUU- -5'
6768 3' -57.7 NC_001875.2 + 68953 0.67 0.750602
Target:  5'- gUCGUUGUcuuCCGgCGCCACGcauuugcacagcaagGCGGAAAc -3'
miRNA:   3'- -GGCAACG---GGCgGCGGUGCa--------------UGCCUUU- -5'
6768 3' -57.7 NC_001875.2 + 128691 0.67 0.758236
Target:  5'- cUCGccGCCCGaCGCCGCGUccgcgcaGCGGGc- -3'
miRNA:   3'- -GGCaaCGGGCgGCGGUGCA-------UGCCUuu -5'
6768 3' -57.7 NC_001875.2 + 92023 0.67 0.759186
Target:  5'- aCCGUgccaaaGUCgGCCGCCgACGUccACGGGc- -3'
miRNA:   3'- -GGCAa-----CGGgCGGCGG-UGCA--UGCCUuu -5'
6768 3' -57.7 NC_001875.2 + 33950 0.67 0.768618
Target:  5'- gCCGacGCCCGCaacguGCC-CGUGCGGc-- -3'
miRNA:   3'- -GGCaaCGGGCGg----CGGuGCAUGCCuuu -5'
6768 3' -57.7 NC_001875.2 + 1787 0.67 0.77793
Target:  5'- gCCGccGCcgCCGCCGCCAuuucCGUcgGCGGAu- -3'
miRNA:   3'- -GGCaaCG--GGCGGCGGU----GCA--UGCCUuu -5'
6768 3' -57.7 NC_001875.2 + 92717 0.67 0.77793
Target:  5'- gCCGgucaggGUcgUCGCCGCCAUGgagcGCGGAAc -3'
miRNA:   3'- -GGCaa----CG--GGCGGCGGUGCa---UGCCUUu -5'
6768 3' -57.7 NC_001875.2 + 23786 0.67 0.77793
Target:  5'- aCGUUGCCCagGUCGCCgACGUgucgcuccGCGGc-- -3'
miRNA:   3'- gGCAACGGG--CGGCGG-UGCA--------UGCCuuu -5'
6768 3' -57.7 NC_001875.2 + 73024 0.67 0.784372
Target:  5'- gCCGUUGCCCGCCugguaguuguugucGaCUACGUucGCGucGAAAa -3'
miRNA:   3'- -GGCAACGGGCGG--------------C-GGUGCA--UGC--CUUU- -5'
6768 3' -57.7 NC_001875.2 + 31250 0.67 0.787112
Target:  5'- gCCGgcGCCCGgC-CCGCGUACGc--- -3'
miRNA:   3'- -GGCaaCGGGCgGcGGUGCAUGCcuuu -5'
6768 3' -57.7 NC_001875.2 + 102995 0.67 0.787112
Target:  5'- gCGacaagUGCCCGCCGUC-CGUGuCGGc-- -3'
miRNA:   3'- gGCa----ACGGGCGGCGGuGCAU-GCCuuu -5'
6768 3' -57.7 NC_001875.2 + 118877 0.67 0.787112
Target:  5'- gCGgaGCCCacgcGCCGCCGCG-ACGaGAc- -3'
miRNA:   3'- gGCaaCGGG----CGGCGGUGCaUGC-CUuu -5'
6768 3' -57.7 NC_001875.2 + 89706 0.66 0.796157
Target:  5'- aCCuUUGCCCGCCaGCUAaucACGGAc- -3'
miRNA:   3'- -GGcAACGGGCGG-CGGUgcaUGCCUuu -5'
6768 3' -57.7 NC_001875.2 + 103458 0.66 0.813798
Target:  5'- gCGUcgUGCaCGCCGCgACGUACGa--- -3'
miRNA:   3'- gGCA--ACGgGCGGCGgUGCAUGCcuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.