miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6769 3' -52.4 NC_001875.2 + 13801 0.66 0.978711
Target:  5'- uGCGggUGGc--GCGGCGuUGCCGUcGCa -3'
miRNA:   3'- gUGCa-ACCucaUGUCGC-ACGGCAaCG- -5'
6769 3' -52.4 NC_001875.2 + 75570 0.66 0.978711
Target:  5'- gGCGUUGGuG-AUAGCGcUGgCGUcgGCg -3'
miRNA:   3'- gUGCAACCuCaUGUCGC-ACgGCAa-CG- -5'
6769 3' -52.4 NC_001875.2 + 114471 0.66 0.976257
Target:  5'- cCACGUUGGcGGUAgAGaUGUGCgGcaGCa -3'
miRNA:   3'- -GUGCAACC-UCAUgUC-GCACGgCaaCG- -5'
6769 3' -52.4 NC_001875.2 + 75612 0.66 0.976257
Target:  5'- gGCGUUGGcGU-CGGCGuUGgCGUcgGCg -3'
miRNA:   3'- gUGCAACCuCAuGUCGC-ACgGCAa-CG- -5'
6769 3' -52.4 NC_001875.2 + 15801 0.66 0.976257
Target:  5'- gGCGgUGGgcgGGUacugcaccaccaACAGCGUGCCGcgagacUGCa -3'
miRNA:   3'- gUGCaACC---UCA------------UGUCGCACGGCa-----ACG- -5'
6769 3' -52.4 NC_001875.2 + 110152 0.66 0.972766
Target:  5'- aACGUUGGccaacguuuugAGUGC-GCGcuuggccuccgccuUGUCGUUGCa -3'
miRNA:   3'- gUGCAACC-----------UCAUGuCGC--------------ACGGCAACG- -5'
6769 3' -52.4 NC_001875.2 + 89350 0.66 0.967661
Target:  5'- gCACGc-GGAcgACGGCGUGCgCGU-GCg -3'
miRNA:   3'- -GUGCaaCCUcaUGUCGCACG-GCAaCG- -5'
6769 3' -52.4 NC_001875.2 + 31660 0.66 0.967661
Target:  5'- aCACGcuucgucUGGAcugGgcCAGCGUGCCGgcGUg -3'
miRNA:   3'- -GUGCa------ACCU---CauGUCGCACGGCaaCG- -5'
6769 3' -52.4 NC_001875.2 + 111111 0.66 0.964358
Target:  5'- aCAUGUUGGuGUcuuGCGUGuuGUcGCu -3'
miRNA:   3'- -GUGCAACCuCAuguCGCACggCAaCG- -5'
6769 3' -52.4 NC_001875.2 + 73002 0.66 0.964358
Target:  5'- gCAUGUUGuuaaacACGGUGUcGCCGUUGCc -3'
miRNA:   3'- -GUGCAACcuca--UGUCGCA-CGGCAACG- -5'
6769 3' -52.4 NC_001875.2 + 33548 0.67 0.960827
Target:  5'- aCGCGUUGGccacAGUGCGGUc-GCCGcgggGCa -3'
miRNA:   3'- -GUGCAACC----UCAUGUCGcaCGGCaa--CG- -5'
6769 3' -52.4 NC_001875.2 + 44767 0.67 0.960827
Target:  5'- gCugGUUGGGGaACgAGCGccGCUGcUUGCu -3'
miRNA:   3'- -GugCAACCUCaUG-UCGCa-CGGC-AACG- -5'
6769 3' -52.4 NC_001875.2 + 47062 0.67 0.957061
Target:  5'- gUACGUUGcGAGcgGCAGCGagauuCCGUuuUGCg -3'
miRNA:   3'- -GUGCAAC-CUCa-UGUCGCac---GGCA--ACG- -5'
6769 3' -52.4 NC_001875.2 + 101082 0.67 0.957061
Target:  5'- gGCGUgggcGGAGcuauacagcgACAGCGUGCaCGU-GCc -3'
miRNA:   3'- gUGCAa---CCUCa---------UGUCGCACG-GCAaCG- -5'
6769 3' -52.4 NC_001875.2 + 109097 0.67 0.948806
Target:  5'- gAUGUgcUGGAGcGguGCGUGgCCGgcGCa -3'
miRNA:   3'- gUGCA--ACCUCaUguCGCAC-GGCaaCG- -5'
6769 3' -52.4 NC_001875.2 + 92795 0.67 0.944308
Target:  5'- uGCGcUUGcGGUACAGCGccccgccgaUGCCGaggUGCg -3'
miRNA:   3'- gUGC-AACcUCAUGUCGC---------ACGGCa--ACG- -5'
6769 3' -52.4 NC_001875.2 + 89213 0.68 0.934558
Target:  5'- gGCGUgccagacaaGGAGUACAcuuGCGUGuuGgcggUGCc -3'
miRNA:   3'- gUGCAa--------CCUCAUGU---CGCACggCa---ACG- -5'
6769 3' -52.4 NC_001875.2 + 31902 0.68 0.929303
Target:  5'- gCGCGUUGGcaaAGUACauGGCGUGCa---GCa -3'
miRNA:   3'- -GUGCAACC---UCAUG--UCGCACGgcaaCG- -5'
6769 3' -52.4 NC_001875.2 + 84975 0.68 0.927676
Target:  5'- uCAUGUcaauUGGAGUggugggcauuuccaGCAGCGUGCgcaaCGUgUGCa -3'
miRNA:   3'- -GUGCA----ACCUCA--------------UGUCGCACG----GCA-ACG- -5'
6769 3' -52.4 NC_001875.2 + 3074 0.68 0.918026
Target:  5'- gCGCGccGGGGUcgcccACGGCGUgcacgcGCCGggGCg -3'
miRNA:   3'- -GUGCaaCCUCA-----UGUCGCA------CGGCaaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.