miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6770 3' -57.1 NC_001875.2 + 90515 1.08 0.002268
Target:  5'- gACGCCCUCGCCCGUAGUGACGUACACc -3'
miRNA:   3'- -UGCGGGAGCGGGCAUCACUGCAUGUG- -5'
6770 3' -57.1 NC_001875.2 + 83801 0.76 0.302198
Target:  5'- cGCGCCCUCguGCCUGUGGgcGGCGgcCACg -3'
miRNA:   3'- -UGCGGGAG--CGGGCAUCa-CUGCauGUG- -5'
6770 3' -57.1 NC_001875.2 + 68604 0.75 0.36209
Target:  5'- -aGCCCgacgCGUuuGUGGUGACGggcgACGCg -3'
miRNA:   3'- ugCGGGa---GCGggCAUCACUGCa---UGUG- -5'
6770 3' -57.1 NC_001875.2 + 44306 0.72 0.514009
Target:  5'- cAUGCCCUCG-UgGUGGuUGACGUACAa -3'
miRNA:   3'- -UGCGGGAGCgGgCAUC-ACUGCAUGUg -5'
6770 3' -57.1 NC_001875.2 + 32776 0.72 0.523806
Target:  5'- cGCGUCCUCGCgCGgcGUgGGCGgGCGCc -3'
miRNA:   3'- -UGCGGGAGCGgGCauCA-CUGCaUGUG- -5'
6770 3' -57.1 NC_001875.2 + 128298 0.72 0.523806
Target:  5'- cGCGCCacggCGCC---GGUGACGUGCGCc -3'
miRNA:   3'- -UGCGGga--GCGGgcaUCACUGCAUGUG- -5'
6770 3' -57.1 NC_001875.2 + 46278 0.71 0.583878
Target:  5'- cCGCCCa-GCCCGUuGUGAUGagGCGCc -3'
miRNA:   3'- uGCGGGagCGGGCAuCACUGCa-UGUG- -5'
6770 3' -57.1 NC_001875.2 + 102985 0.7 0.604247
Target:  5'- gUGCCCUgcggGCaCGUGGUGGCGUGCGg -3'
miRNA:   3'- uGCGGGAg---CGgGCAUCACUGCAUGUg -5'
6770 3' -57.1 NC_001875.2 + 123345 0.7 0.634938
Target:  5'- gGCGCCCacacggacggCGCCCGgcGUGGUGUuuccGCGCg -3'
miRNA:   3'- -UGCGGGa---------GCGGGCauCACUGCA----UGUG- -5'
6770 3' -57.1 NC_001875.2 + 43479 0.7 0.645175
Target:  5'- cACGCCCUuuUGCCCGUGc--ACGcUGCACa -3'
miRNA:   3'- -UGCGGGA--GCGGGCAUcacUGC-AUGUG- -5'
6770 3' -57.1 NC_001875.2 + 126749 0.69 0.665608
Target:  5'- aGCGCgCgcaGCCCcauuagGUGGUcGACGUGCGCg -3'
miRNA:   3'- -UGCGgGag-CGGG------CAUCA-CUGCAUGUG- -5'
6770 3' -57.1 NC_001875.2 + 71896 0.69 0.685933
Target:  5'- gGCGUUCUUGUCCGcccacugGGCGUGCGCg -3'
miRNA:   3'- -UGCGGGAGCGGGCauca---CUGCAUGUG- -5'
6770 3' -57.1 NC_001875.2 + 106561 0.69 0.70608
Target:  5'- cGCGaCCagUCGCCCGUAGUGccCGUcuucaaucaACACa -3'
miRNA:   3'- -UGC-GGg-AGCGGGCAUCACu-GCA---------UGUG- -5'
6770 3' -57.1 NC_001875.2 + 113660 0.68 0.725976
Target:  5'- uACGCCCgccggcacCGCCacaGUGGcGGCGUcGCGCg -3'
miRNA:   3'- -UGCGGGa-------GCGGg--CAUCaCUGCA-UGUG- -5'
6770 3' -57.1 NC_001875.2 + 93611 0.68 0.725976
Target:  5'- cGCGCUUcCGCCuCGUcaaaccUGACGUGCACg -3'
miRNA:   3'- -UGCGGGaGCGG-GCAuc----ACUGCAUGUG- -5'
6770 3' -57.1 NC_001875.2 + 89486 0.68 0.725976
Target:  5'- gGCGCCCUCGCgCCGcaaccgcuUGGgaaaggugcaguUGGCGUcGCGCc -3'
miRNA:   3'- -UGCGGGAGCG-GGC--------AUC------------ACUGCA-UGUG- -5'
6770 3' -57.1 NC_001875.2 + 39983 0.68 0.725976
Target:  5'- gGCGCCCUggggGCCCGUGGccGACugGUAcCACu -3'
miRNA:   3'- -UGCGGGAg---CGGGCAUCa-CUG--CAU-GUG- -5'
6770 3' -57.1 NC_001875.2 + 74611 0.68 0.75519
Target:  5'- gACGaCCaacaucgCGCCCGUGaUGGCGUGCuACg -3'
miRNA:   3'- -UGC-GGga-----GCGGGCAUcACUGCAUG-UG- -5'
6770 3' -57.1 NC_001875.2 + 32960 0.68 0.75519
Target:  5'- uCGCCaugUCGCCCGUGuuuacGACGcGCACg -3'
miRNA:   3'- uGCGGg--AGCGGGCAUca---CUGCaUGUG- -5'
6770 3' -57.1 NC_001875.2 + 122059 0.67 0.774138
Target:  5'- cGCGCag-UGCCCGgauGUGccGCGUGCGCu -3'
miRNA:   3'- -UGCGggaGCGGGCau-CAC--UGCAUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.