miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6770 3' -57.1 NC_001875.2 + 3075 0.67 0.810439
Target:  5'- cGCGCCggggUCGCCCac---GGCGUGCACg -3'
miRNA:   3'- -UGCGGg---AGCGGGcaucaCUGCAUGUG- -5'
6770 3' -57.1 NC_001875.2 + 5878 0.66 0.825114
Target:  5'- uUGCCCUCGCCgaugcgccgaaccaUGUAGU--CGUACAg -3'
miRNA:   3'- uGCGGGAGCGG--------------GCAUCAcuGCAUGUg -5'
6770 3' -57.1 NC_001875.2 + 31246 0.67 0.792578
Target:  5'- cGCGgCCggCGCCCGgccc-GCGUACGCg -3'
miRNA:   3'- -UGCgGGa-GCGGGCaucacUGCAUGUG- -5'
6770 3' -57.1 NC_001875.2 + 32776 0.72 0.523806
Target:  5'- cGCGUCCUCGCgCGgcGUgGGCGgGCGCc -3'
miRNA:   3'- -UGCGGGAGCGgGCauCA-CUGCaUGUG- -5'
6770 3' -57.1 NC_001875.2 + 32960 0.68 0.75519
Target:  5'- uCGCCaugUCGCCCGUGuuuacGACGcGCACg -3'
miRNA:   3'- uGCGGg--AGCGGGCAUca---CUGCaUGUG- -5'
6770 3' -57.1 NC_001875.2 + 33660 0.67 0.798898
Target:  5'- gACGCCgUCGgCggCGUGGUaaaacaaacggcccGACGUGCGCc -3'
miRNA:   3'- -UGCGGgAGCgG--GCAUCA--------------CUGCAUGUG- -5'
6770 3' -57.1 NC_001875.2 + 33953 0.66 0.859886
Target:  5'- gACGCCCgcaacgUGCCCGUGc-GGCGcGCAg -3'
miRNA:   3'- -UGCGGGa-----GCGGGCAUcaCUGCaUGUg -5'
6770 3' -57.1 NC_001875.2 + 39983 0.68 0.725976
Target:  5'- gGCGCCCUggggGCCCGUGGccGACugGUAcCACu -3'
miRNA:   3'- -UGCGGGAg---CGGGCAUCa-CUG--CAU-GUG- -5'
6770 3' -57.1 NC_001875.2 + 43479 0.7 0.645175
Target:  5'- cACGCCCUuuUGCCCGUGc--ACGcUGCACa -3'
miRNA:   3'- -UGCGGGA--GCGGGCAUcacUGC-AUGUG- -5'
6770 3' -57.1 NC_001875.2 + 44306 0.72 0.514009
Target:  5'- cAUGCCCUCG-UgGUGGuUGACGUACAa -3'
miRNA:   3'- -UGCGGGAGCgGgCAUC-ACUGCAUGUg -5'
6770 3' -57.1 NC_001875.2 + 46278 0.71 0.583878
Target:  5'- cCGCCCa-GCCCGUuGUGAUGagGCGCc -3'
miRNA:   3'- uGCGGGagCGGGCAuCACUGCa-UGUG- -5'
6770 3' -57.1 NC_001875.2 + 46796 0.67 0.801585
Target:  5'- uACGUgC-CGCCCGcAGuUGACGgagGCGCa -3'
miRNA:   3'- -UGCGgGaGCGGGCaUC-ACUGCa--UGUG- -5'
6770 3' -57.1 NC_001875.2 + 48002 0.67 0.774138
Target:  5'- cCGCCCUgGaaccagaUCGUGGUGGCGgccCACg -3'
miRNA:   3'- uGCGGGAgCg------GGCAUCACUGCau-GUG- -5'
6770 3' -57.1 NC_001875.2 + 54267 0.66 0.844155
Target:  5'- uGCGCCggUC-CCaCGUaaacuuGGUGACGUACACc -3'
miRNA:   3'- -UGCGGg-AGcGG-GCA------UCACUGCAUGUG- -5'
6770 3' -57.1 NC_001875.2 + 57537 0.67 0.774138
Target:  5'- gGCGCCUgCGCgCCGUAG--GCGaUGCGCu -3'
miRNA:   3'- -UGCGGGaGCG-GGCAUCacUGC-AUGUG- -5'
6770 3' -57.1 NC_001875.2 + 58757 0.66 0.827652
Target:  5'- aGCGUacugCUCGCgCGUGGccaacgacGACGUGCGCu -3'
miRNA:   3'- -UGCGg---GAGCGgGCAUCa-------CUGCAUGUG- -5'
6770 3' -57.1 NC_001875.2 + 63618 0.66 0.827652
Target:  5'- uUGCaacUGCCUGUAGUauucGACGUACGCg -3'
miRNA:   3'- uGCGggaGCGGGCAUCA----CUGCAUGUG- -5'
6770 3' -57.1 NC_001875.2 + 68604 0.75 0.36209
Target:  5'- -aGCCCgacgCGUuuGUGGUGACGggcgACGCg -3'
miRNA:   3'- ugCGGGa---GCGggCAUCACUGCa---UGUG- -5'
6770 3' -57.1 NC_001875.2 + 71896 0.69 0.685933
Target:  5'- gGCGUUCUUGUCCGcccacugGGCGUGCGCg -3'
miRNA:   3'- -UGCGGGAGCGGGCauca---CUGCAUGUG- -5'
6770 3' -57.1 NC_001875.2 + 74611 0.68 0.75519
Target:  5'- gACGaCCaacaucgCGCCCGUGaUGGCGUGCuACg -3'
miRNA:   3'- -UGC-GGga-----GCGGGCAUcACUGCAUG-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.