Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6770 | 3' | -57.1 | NC_001875.2 | + | 68604 | 0.75 | 0.36209 |
Target: 5'- -aGCCCgacgCGUuuGUGGUGACGggcgACGCg -3' miRNA: 3'- ugCGGGa---GCGggCAUCACUGCa---UGUG- -5' |
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6770 | 3' | -57.1 | NC_001875.2 | + | 86065 | 0.66 | 0.81654 |
Target: 5'- cACGUCCUUGUCCG-AGUaGCGUuugaauauguaacgGCACa -3' miRNA: 3'- -UGCGGGAGCGGGCaUCAcUGCA--------------UGUG- -5' |
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6770 | 3' | -57.1 | NC_001875.2 | + | 124928 | 0.66 | 0.81913 |
Target: 5'- cACGCCCUCGgCCG-AGcGcACGUugGu -3' miRNA: 3'- -UGCGGGAGCgGGCaUCaC-UGCAugUg -5' |
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6770 | 3' | -57.1 | NC_001875.2 | + | 5878 | 0.66 | 0.825114 |
Target: 5'- uUGCCCUCGCCgaugcgccgaaccaUGUAGU--CGUACAg -3' miRNA: 3'- uGCGGGAGCGG--------------GCAUCAcuGCAUGUg -5' |
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6770 | 3' | -57.1 | NC_001875.2 | + | 63618 | 0.66 | 0.827652 |
Target: 5'- uUGCaacUGCCUGUAGUauucGACGUACGCg -3' miRNA: 3'- uGCGggaGCGGGCAUCA----CUGCAUGUG- -5' |
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6770 | 3' | -57.1 | NC_001875.2 | + | 85352 | 0.66 | 0.835996 |
Target: 5'- aACGCCgaCG-CCGUGGcGGCGUuCGCg -3' miRNA: 3'- -UGCGGgaGCgGGCAUCaCUGCAuGUG- -5' |
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6770 | 3' | -57.1 | NC_001875.2 | + | 98381 | 0.66 | 0.835996 |
Target: 5'- cGCGCCC-CGaCCaCGacgaGGUGGCGgACGCg -3' miRNA: 3'- -UGCGGGaGC-GG-GCa---UCACUGCaUGUG- -5' |
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6770 | 3' | -57.1 | NC_001875.2 | + | 54267 | 0.66 | 0.844155 |
Target: 5'- uGCGCCggUC-CCaCGUaaacuuGGUGACGUACACc -3' miRNA: 3'- -UGCGGg-AGcGG-GCA------UCACUGCAUGUG- -5' |
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6770 | 3' | -57.1 | NC_001875.2 | + | 82738 | 0.66 | 0.859886 |
Target: 5'- aGCGCUUUaCGCgCaCGUAGUaGuCGUACGCa -3' miRNA: 3'- -UGCGGGA-GCG-G-GCAUCA-CuGCAUGUG- -5' |
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6770 | 3' | -57.1 | NC_001875.2 | + | 114014 | 0.67 | 0.810439 |
Target: 5'- gGCGCCCUCGCgCa---UGGCGgccGCGCg -3' miRNA: 3'- -UGCGGGAGCGgGcaucACUGCa--UGUG- -5' |
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6770 | 3' | -57.1 | NC_001875.2 | + | 78814 | 0.67 | 0.792578 |
Target: 5'- cCGCUUUgCGCCCGUAGUccGugG-GCACc -3' miRNA: 3'- uGCGGGA-GCGGGCAUCA--CugCaUGUG- -5' |
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6770 | 3' | -57.1 | NC_001875.2 | + | 122059 | 0.67 | 0.774138 |
Target: 5'- cGCGCag-UGCCCGgauGUGccGCGUGCGCu -3' miRNA: 3'- -UGCGggaGCGGGCau-CAC--UGCAUGUG- -5' |
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6770 | 3' | -57.1 | NC_001875.2 | + | 44306 | 0.72 | 0.514009 |
Target: 5'- cAUGCCCUCG-UgGUGGuUGACGUACAa -3' miRNA: 3'- -UGCGGGAGCgGgCAUC-ACUGCAUGUg -5' |
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6770 | 3' | -57.1 | NC_001875.2 | + | 32776 | 0.72 | 0.523806 |
Target: 5'- cGCGUCCUCGCgCGgcGUgGGCGgGCGCc -3' miRNA: 3'- -UGCGGGAGCGgGCauCA-CUGCaUGUG- -5' |
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6770 | 3' | -57.1 | NC_001875.2 | + | 46278 | 0.71 | 0.583878 |
Target: 5'- cCGCCCa-GCCCGUuGUGAUGagGCGCc -3' miRNA: 3'- uGCGGGagCGGGCAuCACUGCa-UGUG- -5' |
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6770 | 3' | -57.1 | NC_001875.2 | + | 43479 | 0.7 | 0.645175 |
Target: 5'- cACGCCCUuuUGCCCGUGc--ACGcUGCACa -3' miRNA: 3'- -UGCGGGA--GCGGGCAUcacUGC-AUGUG- -5' |
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6770 | 3' | -57.1 | NC_001875.2 | + | 71896 | 0.69 | 0.685933 |
Target: 5'- gGCGUUCUUGUCCGcccacugGGCGUGCGCg -3' miRNA: 3'- -UGCGGGAGCGGGCauca---CUGCAUGUG- -5' |
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6770 | 3' | -57.1 | NC_001875.2 | + | 39983 | 0.68 | 0.725976 |
Target: 5'- gGCGCCCUggggGCCCGUGGccGACugGUAcCACu -3' miRNA: 3'- -UGCGGGAg---CGGGCAUCa-CUG--CAU-GUG- -5' |
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6770 | 3' | -57.1 | NC_001875.2 | + | 89486 | 0.68 | 0.725976 |
Target: 5'- gGCGCCCUCGCgCCGcaaccgcuUGGgaaaggugcaguUGGCGUcGCGCc -3' miRNA: 3'- -UGCGGGAGCG-GGC--------AUC------------ACUGCA-UGUG- -5' |
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6770 | 3' | -57.1 | NC_001875.2 | + | 48002 | 0.67 | 0.774138 |
Target: 5'- cCGCCCUgGaaccagaUCGUGGUGGCGgccCACg -3' miRNA: 3'- uGCGGGAgCg------GGCAUCACUGCau-GUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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