Results 1 - 20 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6770 | 5' | -50.9 | NC_001875.2 | + | 91134 | 0.66 | 0.994694 |
Target: 5'- ---aGUUGAUGaCGc-GCGCGCGgcGGu -3' miRNA: 3'- gguaCAACUAC-GCcaUGCGCGCuuCC- -5' |
|||||||
6770 | 5' | -50.9 | NC_001875.2 | + | 92603 | 0.66 | 0.994694 |
Target: 5'- gCCGcUGUgcaGA-GUGGUGgGCGCGAGcGGc -3' miRNA: 3'- -GGU-ACAa--CUaCGCCAUgCGCGCUU-CC- -5' |
|||||||
6770 | 5' | -50.9 | NC_001875.2 | + | 63865 | 0.66 | 0.994694 |
Target: 5'- gCGUGaUGucaucauuuUGCGGUuguugcgaaaaGCGCGCGcAAGGu -3' miRNA: 3'- gGUACaACu--------ACGCCA-----------UGCGCGC-UUCC- -5' |
|||||||
6770 | 5' | -50.9 | NC_001875.2 | + | 125348 | 0.66 | 0.993848 |
Target: 5'- gCGUGUUGgcGCGGcACucCGCGuuGGg -3' miRNA: 3'- gGUACAACuaCGCCaUGc-GCGCuuCC- -5' |
|||||||
6770 | 5' | -50.9 | NC_001875.2 | + | 39317 | 0.66 | 0.993848 |
Target: 5'- aCCGUGccgGcgGC-GUGCGCGCGcugcAGGc -3' miRNA: 3'- -GGUACaa-CuaCGcCAUGCGCGCu---UCC- -5' |
|||||||
6770 | 5' | -50.9 | NC_001875.2 | + | 112657 | 0.66 | 0.992897 |
Target: 5'- uCCGUGcaaucGCGGUGCccGCGCGGAauGGa -3' miRNA: 3'- -GGUACaacuaCGCCAUG--CGCGCUU--CC- -5' |
|||||||
6770 | 5' | -50.9 | NC_001875.2 | + | 26892 | 0.66 | 0.99259 |
Target: 5'- aUAUGUUGG-GCGuUACGCGCGcguucugcuggcgcAGGGu -3' miRNA: 3'- gGUACAACUaCGCcAUGCGCGC--------------UUCC- -5' |
|||||||
6770 | 5' | -50.9 | NC_001875.2 | + | 114487 | 0.66 | 0.991833 |
Target: 5'- -gAUGUgcggcagcacucUGAcGCGGU-CGCGCGgcGGc -3' miRNA: 3'- ggUACA------------ACUaCGCCAuGCGCGCuuCC- -5' |
|||||||
6770 | 5' | -50.9 | NC_001875.2 | + | 10060 | 0.66 | 0.989326 |
Target: 5'- gCCGUGcaggaUGaAUGCGGU-CGUGUGGAGc -3' miRNA: 3'- -GGUACa----AC-UACGCCAuGCGCGCUUCc -5' |
|||||||
6770 | 5' | -50.9 | NC_001875.2 | + | 2276 | 0.67 | 0.987867 |
Target: 5'- gCCAUGUUGAcgucGUGaUGCGCGCGcgccguGGc -3' miRNA: 3'- -GGUACAACUa---CGCcAUGCGCGCuu----CC- -5' |
|||||||
6770 | 5' | -50.9 | NC_001875.2 | + | 99783 | 0.67 | 0.986257 |
Target: 5'- gCCAUuu---UGCGGUACGCGCGc--- -3' miRNA: 3'- -GGUAcaacuACGCCAUGCGCGCuucc -5' |
|||||||
6770 | 5' | -50.9 | NC_001875.2 | + | 96027 | 0.67 | 0.984489 |
Target: 5'- cCCAUGcUG-UGCGugGCGCGCGAGu- -3' miRNA: 3'- -GGUACaACuACGCcaUGCGCGCUUcc -5' |
|||||||
6770 | 5' | -50.9 | NC_001875.2 | + | 43286 | 0.68 | 0.979085 |
Target: 5'- aCAUGUaggggauguuaaauaUGGgguaGCGGcGCGCGCGcGGGu -3' miRNA: 3'- gGUACA---------------ACUa---CGCCaUGCGCGCuUCC- -5' |
|||||||
6770 | 5' | -50.9 | NC_001875.2 | + | 63120 | 0.68 | 0.975652 |
Target: 5'- uCCAUGg-GAUaGCGGccggGCGCGCGGccggcgcacGGGu -3' miRNA: 3'- -GGUACaaCUA-CGCCa---UGCGCGCU---------UCC- -5' |
|||||||
6770 | 5' | -50.9 | NC_001875.2 | + | 85847 | 0.68 | 0.975652 |
Target: 5'- aCCGcGUUGuUGUGGUGCGCGUccgucacgcuGGGg -3' miRNA: 3'- -GGUaCAACuACGCCAUGCGCGcu--------UCC- -5' |
|||||||
6770 | 5' | -50.9 | NC_001875.2 | + | 124891 | 0.68 | 0.970058 |
Target: 5'- aCGUGUUGAggcGCGGguuuuguuguaGCGCGCGGu-- -3' miRNA: 3'- gGUACAACUa--CGCCa----------UGCGCGCUucc -5' |
|||||||
6770 | 5' | -50.9 | NC_001875.2 | + | 21358 | 0.68 | 0.96694 |
Target: 5'- gCCGUGUgcuUGAcGCGGUACuuGCGGuuGGc -3' miRNA: 3'- -GGUACA---ACUaCGCCAUGcgCGCUu-CC- -5' |
|||||||
6770 | 5' | -50.9 | NC_001875.2 | + | 45966 | 0.69 | 0.9636 |
Target: 5'- aCCAgg-UGcgGCGGUACcccaGCGUGAcGGa -3' miRNA: 3'- -GGUacaACuaCGCCAUG----CGCGCUuCC- -5' |
|||||||
6770 | 5' | -50.9 | NC_001875.2 | + | 15706 | 0.69 | 0.9636 |
Target: 5'- cCCAUGuUUGAcUGCGGcgagGUGUGCGAGGa -3' miRNA: 3'- -GGUAC-AACU-ACGCCa---UGCGCGCUUCc -5' |
|||||||
6770 | 5' | -50.9 | NC_001875.2 | + | 93992 | 0.69 | 0.9636 |
Target: 5'- -aAUGUU--UGUGGUGCGCGCGcAGc -3' miRNA: 3'- ggUACAAcuACGCCAUGCGCGCuUCc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home