Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6772 | 3' | -50.1 | NC_001875.2 | + | 73784 | 0.66 | 0.995324 |
Target: 5'- aGG-GUUGuGGCGgcGGCGGcUGgaacgGCAGCg -3' miRNA: 3'- -CCaCAAC-CUGC--UCGUCaACaa---CGUCG- -5' |
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6772 | 3' | -50.1 | NC_001875.2 | + | 11989 | 0.66 | 0.995324 |
Target: 5'- cGGcGUUGGGCGcGGguGUgGUgGCgAGCg -3' miRNA: 3'- -CCaCAACCUGC-UCguCAaCAaCG-UCG- -5' |
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6772 | 3' | -50.1 | NC_001875.2 | + | 19063 | 0.66 | 0.995324 |
Target: 5'- aGGUGaacucGGACGGGCAGa---UGCuGGCg -3' miRNA: 3'- -CCACaa---CCUGCUCGUCaacaACG-UCG- -5' |
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6772 | 3' | -50.1 | NC_001875.2 | + | 57319 | 0.66 | 0.995324 |
Target: 5'- --cGUcGG-CGAcGCAaUUGUUGCGGCa -3' miRNA: 3'- ccaCAaCCuGCU-CGUcAACAACGUCG- -5' |
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6772 | 3' | -50.1 | NC_001875.2 | + | 131743 | 0.66 | 0.995324 |
Target: 5'- uGGUGcaUUGGGCcGGCGGcgGaucggGCGGCg -3' miRNA: 3'- -CCAC--AACCUGcUCGUCaaCaa---CGUCG- -5' |
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6772 | 3' | -50.1 | NC_001875.2 | + | 92638 | 0.66 | 0.995324 |
Target: 5'- ------cGACGuGGCGGUUGUaGCGGCg -3' miRNA: 3'- ccacaacCUGC-UCGUCAACAaCGUCG- -5' |
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6772 | 3' | -50.1 | NC_001875.2 | + | 7423 | 0.66 | 0.993657 |
Target: 5'- -uUGUUGGGCGAGgAGggccUUGUAGg -3' miRNA: 3'- ccACAACCUGCUCgUCaac-AACGUCg -5' |
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6772 | 3' | -50.1 | NC_001875.2 | + | 74216 | 0.66 | 0.992661 |
Target: 5'- ----cUGGGCGGGCGuUUGgcGCAGUu -3' miRNA: 3'- ccacaACCUGCUCGUcAACaaCGUCG- -5' |
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6772 | 3' | -50.1 | NC_001875.2 | + | 125332 | 0.66 | 0.992661 |
Target: 5'- cGGUGgacGGCGgccAGCGuGUUGgcGCGGCa -3' miRNA: 3'- -CCACaacCUGC---UCGU-CAACaaCGUCG- -5' |
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6772 | 3' | -50.1 | NC_001875.2 | + | 125740 | 0.66 | 0.991543 |
Target: 5'- ------uGACGAGCAGUguuUGUggGCGGCu -3' miRNA: 3'- ccacaacCUGCUCGUCA---ACAa-CGUCG- -5' |
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6772 | 3' | -50.1 | NC_001875.2 | + | 24075 | 0.66 | 0.991543 |
Target: 5'- cGUuUUGGGCG-GCGGcguugaGUUGCGGCc -3' miRNA: 3'- cCAcAACCUGCuCGUCaa----CAACGUCG- -5' |
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6772 | 3' | -50.1 | NC_001875.2 | + | 45120 | 0.67 | 0.988909 |
Target: 5'- -aUGUgcGACGAGCAGUgucgGccggGCGGCa -3' miRNA: 3'- ccACAacCUGCUCGUCAa---Caa--CGUCG- -5' |
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6772 | 3' | -50.1 | NC_001875.2 | + | 124635 | 0.67 | 0.987372 |
Target: 5'- cGUGUUGGAcaCGAGCGGgucGUUG--GCa -3' miRNA: 3'- cCACAACCU--GCUCGUCaa-CAACguCG- -5' |
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6772 | 3' | -50.1 | NC_001875.2 | + | 43643 | 0.67 | 0.987372 |
Target: 5'- -----cGGACGAGguGUcguagcUGUcggGCAGCg -3' miRNA: 3'- ccacaaCCUGCUCguCA------ACAa--CGUCG- -5' |
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6772 | 3' | -50.1 | NC_001875.2 | + | 124892 | 0.67 | 0.983811 |
Target: 5'- cGUGUUGaGgcGCGGGUu-UUGUUGUAGCg -3' miRNA: 3'- cCACAAC-C--UGCUCGucAACAACGUCG- -5' |
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6772 | 3' | -50.1 | NC_001875.2 | + | 70772 | 0.68 | 0.981767 |
Target: 5'- -----cGGGCGGcGCAGUUuuugUGCAGCa -3' miRNA: 3'- ccacaaCCUGCU-CGUCAAca--ACGUCG- -5' |
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6772 | 3' | -50.1 | NC_001875.2 | + | 123821 | 0.69 | 0.96856 |
Target: 5'- -uUGUUGGugGAGCAGUacaUGUcGUAc- -3' miRNA: 3'- ccACAACCugCUCGUCA---ACAaCGUcg -5' |
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6772 | 3' | -50.1 | NC_001875.2 | + | 125005 | 0.69 | 0.96856 |
Target: 5'- --aGUUGGcguCGGGCAcGUUGUcgacGCGGCg -3' miRNA: 3'- ccaCAACCu--GCUCGU-CAACAa---CGUCG- -5' |
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6772 | 3' | -50.1 | NC_001875.2 | + | 26092 | 0.69 | 0.967919 |
Target: 5'- aGUGUgaagUGGGCGAGgAGcucaucgaccagUGggGCAGCg -3' miRNA: 3'- cCACA----ACCUGCUCgUCa-----------ACaaCGUCG- -5' |
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6772 | 3' | -50.1 | NC_001875.2 | + | 65143 | 0.69 | 0.96173 |
Target: 5'- uGGUGUcGGA--GGCGGUcacgUGCAGCa -3' miRNA: 3'- -CCACAaCCUgcUCGUCAaca-ACGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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