miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6773 5' -50.2 NC_001875.2 + 89677 1.11 0.008559
Target:  5'- cGUCGUUUACGUUUGACCGCGCGACGGc -3'
miRNA:   3'- -CAGCAAAUGCAAACUGGCGCGCUGCC- -5'
6773 5' -50.2 NC_001875.2 + 50352 0.81 0.451851
Target:  5'- cGUCGUUgGCGUcgGGCCGCGCGcgccacugaccGCGGa -3'
miRNA:   3'- -CAGCAAaUGCAaaCUGGCGCGC-----------UGCC- -5'
6773 5' -50.2 NC_001875.2 + 14807 0.76 0.738896
Target:  5'- ------cACuUUUGGCCGCGCGGCGGg -3'
miRNA:   3'- cagcaaaUGcAAACUGGCGCGCUGCC- -5'
6773 5' -50.2 NC_001875.2 + 46619 0.75 0.797127
Target:  5'- cGUCGacaUGCGgcgcuACCGCGCGGCGGc -3'
miRNA:   3'- -CAGCaa-AUGCaaac-UGGCGCGCUGCC- -5'
6773 5' -50.2 NC_001875.2 + 54999 0.73 0.849672
Target:  5'- uUCGUUUcgugGCGauUUUGACCaGCGCGGCGc -3'
miRNA:   3'- cAGCAAA----UGC--AAACUGG-CGCGCUGCc -5'
6773 5' -50.2 NC_001875.2 + 62451 0.72 0.901388
Target:  5'- gGUCGUgaccacgUGCGUUUcggugGACgGCGCGcaGCGGg -3'
miRNA:   3'- -CAGCAa------AUGCAAA-----CUGgCGCGC--UGCC- -5'
6773 5' -50.2 NC_001875.2 + 21062 0.72 0.90782
Target:  5'- gGUCGgcgGCGUUuugGGCaaaagaCGCGCGGCGGc -3'
miRNA:   3'- -CAGCaaaUGCAAa--CUG------GCGCGCUGCC- -5'
6773 5' -50.2 NC_001875.2 + 29260 0.7 0.950179
Target:  5'- -gCGggUGCGcggccgccGACCGCGCcGGCGGg -3'
miRNA:   3'- caGCaaAUGCaaa-----CUGGCGCG-CUGCC- -5'
6773 5' -50.2 NC_001875.2 + 16225 0.7 0.950179
Target:  5'- aGUCGg--GCGagugUGACUGCGgCGACGa -3'
miRNA:   3'- -CAGCaaaUGCaa--ACUGGCGC-GCUGCc -5'
6773 5' -50.2 NC_001875.2 + 98738 0.7 0.958269
Target:  5'- gGUCGUggUGCGUgcucaGCCGCGaCGGCGc -3'
miRNA:   3'- -CAGCAa-AUGCAaac--UGGCGC-GCUGCc -5'
6773 5' -50.2 NC_001875.2 + 116899 0.7 0.961956
Target:  5'- uUCGUcUGCGcua-GCCGCGCGcgGCGGg -3'
miRNA:   3'- cAGCAaAUGCaaacUGGCGCGC--UGCC- -5'
6773 5' -50.2 NC_001875.2 + 11870 0.69 0.96541
Target:  5'- uGUUuUUUGCGg-UGugCGCGgCGACGGa -3'
miRNA:   3'- -CAGcAAAUGCaaACugGCGC-GCUGCC- -5'
6773 5' -50.2 NC_001875.2 + 48295 0.69 0.968637
Target:  5'- --aGUggGCGUguuugcGACUGCGCGACGc -3'
miRNA:   3'- cagCAaaUGCAaa----CUGGCGCGCUGCc -5'
6773 5' -50.2 NC_001875.2 + 2286 0.69 0.968637
Target:  5'- cGUCGUgaUGCGcgcgcgccgUGGCCGCGCGcagcuCGGc -3'
miRNA:   3'- -CAGCAa-AUGCaa-------ACUGGCGCGCu----GCC- -5'
6773 5' -50.2 NC_001875.2 + 19938 0.69 0.968637
Target:  5'- -cCGUacACGgagcGGCCgGCGCGACGGu -3'
miRNA:   3'- caGCAaaUGCaaa-CUGG-CGCGCUGCC- -5'
6773 5' -50.2 NC_001875.2 + 101989 0.69 0.971645
Target:  5'- cGUUGUgcaUUGCGgc-GugCGCGgCGGCGGu -3'
miRNA:   3'- -CAGCA---AAUGCaaaCugGCGC-GCUGCC- -5'
6773 5' -50.2 NC_001875.2 + 91121 0.69 0.971645
Target:  5'- -gUGUUgGCGUUguaguugaUGACgcgCGCGCGGCGGu -3'
miRNA:   3'- caGCAAaUGCAA--------ACUG---GCGCGCUGCC- -5'
6773 5' -50.2 NC_001875.2 + 59068 0.69 0.971645
Target:  5'- cGUCGgcaaACgGUUUGGCCGgCGCGgaaACGGu -3'
miRNA:   3'- -CAGCaaa-UG-CAAACUGGC-GCGC---UGCC- -5'
6773 5' -50.2 NC_001875.2 + 43526 0.69 0.974439
Target:  5'- cGUCGguggACGUgacGACCGCGguGCGGa -3'
miRNA:   3'- -CAGCaaa-UGCAaa-CUGGCGCgcUGCC- -5'
6773 5' -50.2 NC_001875.2 + 15003 0.69 0.974439
Target:  5'- --aGUUUGCGUgcugUGACUGUGcCGACa- -3'
miRNA:   3'- cagCAAAUGCAa---ACUGGCGC-GCUGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.