miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6773 5' -50.2 NC_001875.2 + 42192 0.66 0.995131
Target:  5'- gGUUGg--GCGUUUcaaauAgCGCGCGGCGGc -3'
miRNA:   3'- -CAGCaaaUGCAAAc----UgGCGCGCUGCC- -5'
6773 5' -50.2 NC_001875.2 + 82032 0.67 0.991325
Target:  5'- -aCGggUACGUg-GACauCGCGGCGGg -3'
miRNA:   3'- caGCaaAUGCAaaCUGgcGCGCUGCC- -5'
6773 5' -50.2 NC_001875.2 + 79122 0.67 0.991325
Target:  5'- cGUUGUcgGCGgc-GGgCGcCGCGGCGGg -3'
miRNA:   3'- -CAGCAaaUGCaaaCUgGC-GCGCUGCC- -5'
6773 5' -50.2 NC_001875.2 + 98168 0.67 0.992445
Target:  5'- cGUCGggc-CGUUUGuuuuaccacGCCGC-CGACGGc -3'
miRNA:   3'- -CAGCaaauGCAAAC---------UGGCGcGCUGCC- -5'
6773 5' -50.2 NC_001875.2 + 85855 0.67 0.993447
Target:  5'- uGUUGUgcACGgcgagUUcGCCGCaGCGGCGGc -3'
miRNA:   3'- -CAGCAaaUGCa----AAcUGGCG-CGCUGCC- -5'
6773 5' -50.2 NC_001875.2 + 7029 0.66 0.994339
Target:  5'- -aCGUaaGCGaggUGGCCGCGCGcuuguCGGc -3'
miRNA:   3'- caGCAaaUGCaa-ACUGGCGCGCu----GCC- -5'
6773 5' -50.2 NC_001875.2 + 90676 0.66 0.994339
Target:  5'- -gCGUUgcUGCGgaUGACCuCGaCGAUGGg -3'
miRNA:   3'- caGCAA--AUGCaaACUGGcGC-GCUGCC- -5'
6773 5' -50.2 NC_001875.2 + 27694 0.66 0.994339
Target:  5'- aUCGcgccgcCGUUUGAgCCGCacaacgagGCGACGGg -3'
miRNA:   3'- cAGCaaau--GCAAACU-GGCG--------CGCUGCC- -5'
6773 5' -50.2 NC_001875.2 + 113609 0.66 0.995056
Target:  5'- aGUCG---GCGgcgGGCCGCggcggcaagagcgGCGACGGc -3'
miRNA:   3'- -CAGCaaaUGCaaaCUGGCG-------------CGCUGCC- -5'
6773 5' -50.2 NC_001875.2 + 81329 0.67 0.991325
Target:  5'- cUCGUcauCGU---GCCGCGCGGCGc -3'
miRNA:   3'- cAGCAaauGCAaacUGGCGCGCUGCc -5'
6773 5' -50.2 NC_001875.2 + 85291 0.68 0.987167
Target:  5'- --gGUUUGCGcg-GGCgGCGCGggcGCGGg -3'
miRNA:   3'- cagCAAAUGCaaaCUGgCGCGC---UGCC- -5'
6773 5' -50.2 NC_001875.2 + 71925 0.68 0.981618
Target:  5'- cGUCGgcgaGCGccUUGACCGCGCGcuccGCGc -3'
miRNA:   3'- -CAGCaaa-UGCa-AACUGGCGCGC----UGCc -5'
6773 5' -50.2 NC_001875.2 + 54999 0.73 0.849672
Target:  5'- uUCGUUUcgugGCGauUUUGACCaGCGCGGCGc -3'
miRNA:   3'- cAGCAAA----UGC--AAACUGG-CGCGCUGCc -5'
6773 5' -50.2 NC_001875.2 + 62451 0.72 0.901388
Target:  5'- gGUCGUgaccacgUGCGUUUcggugGACgGCGCGcaGCGGg -3'
miRNA:   3'- -CAGCAa------AUGCAAA-----CUGgCGCGC--UGCC- -5'
6773 5' -50.2 NC_001875.2 + 16225 0.7 0.950179
Target:  5'- aGUCGg--GCGagugUGACUGCGgCGACGa -3'
miRNA:   3'- -CAGCaaaUGCaa--ACUGGCGC-GCUGCc -5'
6773 5' -50.2 NC_001875.2 + 29260 0.7 0.950179
Target:  5'- -gCGggUGCGcggccgccGACCGCGCcGGCGGg -3'
miRNA:   3'- caGCaaAUGCaaa-----CUGGCGCG-CUGCC- -5'
6773 5' -50.2 NC_001875.2 + 98738 0.7 0.958269
Target:  5'- gGUCGUggUGCGUgcucaGCCGCGaCGGCGc -3'
miRNA:   3'- -CAGCAa-AUGCAaac--UGGCGC-GCUGCc -5'
6773 5' -50.2 NC_001875.2 + 116899 0.7 0.961956
Target:  5'- uUCGUcUGCGcua-GCCGCGCGcgGCGGg -3'
miRNA:   3'- cAGCAaAUGCaaacUGGCGCGC--UGCC- -5'
6773 5' -50.2 NC_001875.2 + 59068 0.69 0.971645
Target:  5'- cGUCGgcaaACgGUUUGGCCGgCGCGgaaACGGu -3'
miRNA:   3'- -CAGCaaa-UG-CAAACUGGC-GCGC---UGCC- -5'
6773 5' -50.2 NC_001875.2 + 43526 0.69 0.974439
Target:  5'- cGUCGguggACGUgacGACCGCGguGCGGa -3'
miRNA:   3'- -CAGCaaa-UGCAaa-CUGGCGCgcUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.