miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6774 5' -53 NC_001875.2 + 2544 0.66 0.968152
Target:  5'- cCGGUgaacaaCGGCGCgucgGGCGCAAAc -3'
miRNA:   3'- cGCCAaagca-GCUGCGa---CCGCGUUUa -5'
6774 5' -53 NC_001875.2 + 97766 0.66 0.968152
Target:  5'- aCGGg--CGUgUGGCuGUUGGCGCAAAc -3'
miRNA:   3'- cGCCaaaGCA-GCUG-CGACCGCGUUUa -5'
6774 5' -53 NC_001875.2 + 20811 0.66 0.967836
Target:  5'- cGCGGgcgUCGUCGcaGCGCuugucgaccaaacUGGUGUAGc- -3'
miRNA:   3'- -CGCCaa-AGCAGC--UGCG-------------ACCGCGUUua -5'
6774 5' -53 NC_001875.2 + 50337 0.66 0.964887
Target:  5'- aGCuGGUggUGUCGGCGUcguUGGCGuCGGGc -3'
miRNA:   3'- -CG-CCAaaGCAGCUGCG---ACCGC-GUUUa -5'
6774 5' -53 NC_001875.2 + 54341 0.66 0.961395
Target:  5'- aCGGUcacgUCGUUgGACGCgcccGGCGCGu-- -3'
miRNA:   3'- cGCCAa---AGCAG-CUGCGa---CCGCGUuua -5'
6774 5' -53 NC_001875.2 + 65792 0.66 0.961395
Target:  5'- cGCGG---CGUCGGCGCgcGGUGCc--- -3'
miRNA:   3'- -CGCCaaaGCAGCUGCGa-CCGCGuuua -5'
6774 5' -53 NC_001875.2 + 55024 0.66 0.957669
Target:  5'- cGCGGcgcgcuUUUUGUCGuACGCUuGGUGCu--- -3'
miRNA:   3'- -CGCC------AAAGCAGC-UGCGA-CCGCGuuua -5'
6774 5' -53 NC_001875.2 + 63709 0.66 0.957669
Target:  5'- uGCGGUUugUCGgucgCGGCGaCggcgGGCGCu--- -3'
miRNA:   3'- -CGCCAA--AGCa---GCUGC-Ga---CCGCGuuua -5'
6774 5' -53 NC_001875.2 + 39669 0.66 0.953704
Target:  5'- cGUGGcUUCGUCGAaaacaaagccCGC-GGUGCAAu- -3'
miRNA:   3'- -CGCCaAAGCAGCU----------GCGaCCGCGUUua -5'
6774 5' -53 NC_001875.2 + 109107 0.66 0.949496
Target:  5'- aGCGGUg----CGugGCcGGCGCAc-- -3'
miRNA:   3'- -CGCCAaagcaGCugCGaCCGCGUuua -5'
6774 5' -53 NC_001875.2 + 43860 0.66 0.949496
Target:  5'- cGCGGg--CGUCGcguACGCgGGCGUu--- -3'
miRNA:   3'- -CGCCaaaGCAGC---UGCGaCCGCGuuua -5'
6774 5' -53 NC_001875.2 + 99605 0.66 0.949496
Target:  5'- cCGGUaugucugcgCGUUGGCGUucugcaagUGGCGCAAGUu -3'
miRNA:   3'- cGCCAaa-------GCAGCUGCG--------ACCGCGUUUA- -5'
6774 5' -53 NC_001875.2 + 41661 0.66 0.949496
Target:  5'- uUGGUaguuaaguugauUUCGUUGuuGCUGGCGUAGc- -3'
miRNA:   3'- cGCCA------------AAGCAGCugCGACCGCGUUua -5'
6774 5' -53 NC_001875.2 + 110176 0.66 0.949496
Target:  5'- gGCGGcgUcgcacugcgcUCGUCcGCGCUGGCGUu--- -3'
miRNA:   3'- -CGCCa-A----------AGCAGcUGCGACCGCGuuua -5'
6774 5' -53 NC_001875.2 + 75412 0.66 0.949496
Target:  5'- uUGGUgauggCGUCGGCGUUGGUGa---- -3'
miRNA:   3'- cGCCAaa---GCAGCUGCGACCGCguuua -5'
6774 5' -53 NC_001875.2 + 75310 0.66 0.949496
Target:  5'- uUGGUgauggCGUCGGCGaUGGCGUcgGUg -3'
miRNA:   3'- cGCCAaa---GCAGCUGCgACCGCGuuUA- -5'
6774 5' -53 NC_001875.2 + 105557 0.67 0.945041
Target:  5'- uCGGUgUCGUCGuCGCacucaaGGCGCGu-- -3'
miRNA:   3'- cGCCAaAGCAGCuGCGa-----CCGCGUuua -5'
6774 5' -53 NC_001875.2 + 35858 0.67 0.945041
Target:  5'- cGCGGUUUUGUUG-CGCa-GCGCGu-- -3'
miRNA:   3'- -CGCCAAAGCAGCuGCGacCGCGUuua -5'
6774 5' -53 NC_001875.2 + 33227 0.67 0.930168
Target:  5'- cGCGGgcUCGccgggcgccguuUCGGCGC-GGCGCu--- -3'
miRNA:   3'- -CGCCaaAGC------------AGCUGCGaCCGCGuuua -5'
6774 5' -53 NC_001875.2 + 78213 0.67 0.930168
Target:  5'- aUGGggcugUUGUUGACGCUgaGGCGCGu-- -3'
miRNA:   3'- cGCCaa---AGCAGCUGCGA--CCGCGUuua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.