miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6775 3' -49.2 NC_001875.2 + 88869 1.13 0.005634
Target:  5'- cCGCCUUUCAAAGCAUUGUUGGCGCGCu -3'
miRNA:   3'- -GCGGAAAGUUUCGUAACAACCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 119815 0.8 0.52741
Target:  5'- uCGuCCUcgauUUCAAAGCGuUUGUUGGCcGCGCu -3'
miRNA:   3'- -GC-GGA----AAGUUUCGU-AACAACCG-CGCG- -5'
6775 3' -49.2 NC_001875.2 + 120747 0.78 0.613246
Target:  5'- gCGCCgagaCGGGGCcgUGUccagGGCGCGCg -3'
miRNA:   3'- -GCGGaaa-GUUUCGuaACAa---CCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 127397 0.78 0.645928
Target:  5'- aGCCUggcCAAAGUGcUGgcGGCGCGCg -3'
miRNA:   3'- gCGGAaa-GUUUCGUaACaaCCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 53537 0.76 0.710676
Target:  5'- gGCCgUUUUAAGGCuGUUGUUGGCG-GCc -3'
miRNA:   3'- gCGG-AAAGUUUCG-UAACAACCGCgCG- -5'
6775 3' -49.2 NC_001875.2 + 85838 0.76 0.75247
Target:  5'- aCGUCgugCAccGCGUUGUugUGGUGCGCg -3'
miRNA:   3'- -GCGGaaaGUuuCGUAACA--ACCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 72629 0.75 0.791375
Target:  5'- gGCCUgcggCAcgccaaacggcgcGGGUaaaaaGUUGUUGGCGCGCa -3'
miRNA:   3'- gCGGAaa--GU-------------UUCG-----UAACAACCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 69607 0.74 0.81134
Target:  5'- gCGUUUggUCAAAaCGUgcUGUUGGCGCGCg -3'
miRNA:   3'- -GCGGAa-AGUUUcGUA--ACAACCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 53920 0.74 0.820567
Target:  5'- gCGCCguugcGGGCGc-GUUGGCGCGCa -3'
miRNA:   3'- -GCGGaaaguUUCGUaaCAACCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 44248 0.73 0.855441
Target:  5'- aCGCgUUaaUgGAAGCGUUGacaGGCGCGCc -3'
miRNA:   3'- -GCGgAA--AgUUUCGUAACaa-CCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 38437 0.73 0.855441
Target:  5'- cCGCCUacgAAAGCAgcaagUGccGGCGCGCg -3'
miRNA:   3'- -GCGGAaagUUUCGUa----ACaaCCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 81982 0.73 0.855441
Target:  5'- gCGCCgg-CAAGGCGcgccgGccGGCGCGCa -3'
miRNA:   3'- -GCGGaaaGUUUCGUaa---CaaCCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 99411 0.73 0.863607
Target:  5'- gGUCgcgCAgcGCAUUGUUGGCcaGCGCc -3'
miRNA:   3'- gCGGaaaGUuuCGUAACAACCG--CGCG- -5'
6775 3' -49.2 NC_001875.2 + 55294 0.73 0.870755
Target:  5'- gGCCUuguucaccaaaauUUCGcGGCAg---UGGCGCGCg -3'
miRNA:   3'- gCGGA-------------AAGUuUCGUaacaACCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 35847 0.73 0.871537
Target:  5'- gGCCUUuugCAGGGUAcUGcacGGCGCGCu -3'
miRNA:   3'- gCGGAAa--GUUUCGUaACaa-CCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 20901 0.72 0.893843
Target:  5'- gCGCCagccCGucGCAUUGUUcgugugGGCGCGCc -3'
miRNA:   3'- -GCGGaaa-GUuuCGUAACAA------CCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 10977 0.72 0.91319
Target:  5'- gGCCUgcagUCAagcgacgAAGCGcUGcaGGCGCGCg -3'
miRNA:   3'- gCGGAa---AGU-------UUCGUaACaaCCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 46439 0.72 0.913817
Target:  5'- gGCCUUUUu-GGUuacggUGGCGCGCa -3'
miRNA:   3'- gCGGAAAGuuUCGuaacaACCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 54993 0.71 0.931375
Target:  5'- gCGCCUUUCGuuucguGGCGauuUUGaccagcgcGGCGCGCu -3'
miRNA:   3'- -GCGGAAAGUu-----UCGU---AACaa------CCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 25366 0.7 0.946501
Target:  5'- uGUUUUUCAAAGCcgUcaacGUUGGCccgGCGCc -3'
miRNA:   3'- gCGGAAAGUUUCGuaA----CAACCG---CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.