miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6775 3' -49.2 NC_001875.2 + 347 0.68 0.982682
Target:  5'- gCGCCgcagacugUCGAucuGCAc-GUUGGCcGCGCg -3'
miRNA:   3'- -GCGGaa------AGUUu--CGUaaCAACCG-CGCG- -5'
6775 3' -49.2 NC_001875.2 + 1250 0.67 0.994146
Target:  5'- gCGCaaUUUAAacAGUGUU-UUGGCGCGCa -3'
miRNA:   3'- -GCGgaAAGUU--UCGUAAcAACCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 2857 0.69 0.972753
Target:  5'- gCGCCaagaaUUUguAGCAgcgGUUGGgGCGCg -3'
miRNA:   3'- -GCGGa----AAGuuUCGUaa-CAACCgCGCG- -5'
6775 3' -49.2 NC_001875.2 + 2925 0.69 0.97555
Target:  5'- cCGCCUcgugcaaaUUCAccGCGcgc-UGGCGCGCu -3'
miRNA:   3'- -GCGGA--------AAGUuuCGUaacaACCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 3040 0.67 0.990937
Target:  5'- aCGCCguugggCAgcGCGUaagaGGCGCGCa -3'
miRNA:   3'- -GCGGaaa---GUuuCGUAacaaCCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 4560 0.66 0.994985
Target:  5'- gCGCacgUCGgcAAGCAaUGUUGcCGCGCu -3'
miRNA:   3'- -GCGgaaAGU--UUCGUaACAACcGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 5915 0.66 0.996934
Target:  5'- gCGCCgg-CAuGGCGUUGgguaGCGcCGCg -3'
miRNA:   3'- -GCGGaaaGUuUCGUAACaac-CGC-GCG- -5'
6775 3' -49.2 NC_001875.2 + 10977 0.72 0.91319
Target:  5'- gGCCUgcagUCAagcgacgAAGCGcUGcaGGCGCGCg -3'
miRNA:   3'- gCGGAa---AGU-------UUCGUaACaaCCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 11056 0.68 0.982682
Target:  5'- aCGCgCg--CAAacugcAGCAguUUGgcgUGGCGCGCg -3'
miRNA:   3'- -GCG-GaaaGUU-----UCGU--AACa--ACCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 11566 0.67 0.989603
Target:  5'- gCGCCgc-CGAAGCGggGagcGGUGUGCg -3'
miRNA:   3'- -GCGGaaaGUUUCGUaaCaa-CCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 11608 0.68 0.987806
Target:  5'- aGCgUUgc--GGCGUggccacgaauggGUUGGCGCGCa -3'
miRNA:   3'- gCGgAAaguuUCGUAa-----------CAACCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 12417 0.67 0.994146
Target:  5'- uGCCgcgCGccAAGCAggccGUUGcGUGCGCg -3'
miRNA:   3'- gCGGaaaGU--UUCGUaa--CAAC-CGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 12839 0.66 0.994985
Target:  5'- gGCCacguagUC-GGGCAUc--UGGCGCGCa -3'
miRNA:   3'- gCGGaa----AGuUUCGUAacaACCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 14593 0.66 0.997424
Target:  5'- uGCCUgcaaaAAGGaaaauaGUUGUggggccuguuccUGGCGCGCc -3'
miRNA:   3'- gCGGAaag--UUUCg-----UAACA------------ACCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 18248 0.69 0.978131
Target:  5'- cCGCCgacUCGAAcGCcgUGcuggcccaaUGGCGCGCc -3'
miRNA:   3'- -GCGGaa-AGUUU-CGuaACa--------ACCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 18433 0.69 0.97555
Target:  5'- uCGgCg--CGAGGCGcgGUccgcgUGGCGCGCg -3'
miRNA:   3'- -GCgGaaaGUUUCGUaaCA-----ACCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 19099 0.67 0.994146
Target:  5'- -cCCga-CAGGGCcgUGUUGcuguGCGCGCg -3'
miRNA:   3'- gcGGaaaGUUUCGuaACAAC----CGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 20901 0.72 0.893843
Target:  5'- gCGCCagccCGucGCAUUGUUcgugugGGCGCGCc -3'
miRNA:   3'- -GCGGaaa-GUuuCGUAACAA------CCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 22989 0.67 0.994146
Target:  5'- gCGCCgc-CAAGaucugcGCGUUuugGGCGCGCa -3'
miRNA:   3'- -GCGGaaaGUUU------CGUAAcaaCCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 25366 0.7 0.946501
Target:  5'- uGUUUUUCAAAGCcgUcaacGUUGGCccgGCGCc -3'
miRNA:   3'- gCGGAAAGUUUCGuaA----CAACCG---CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.