miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6775 3' -49.2 NC_001875.2 + 66601 0.68 0.982473
Target:  5'- gGCCUcuugCAuguugucGGGCAgcg-UGGCGCGCu -3'
miRNA:   3'- gCGGAaa--GU-------UUCGUaacaACCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 29281 0.7 0.962985
Target:  5'- gCGCCgg-CGGGGCGcgGUcgugUGGCGUGUc -3'
miRNA:   3'- -GCGGaaaGUUUCGUaaCA----ACCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 54003 0.7 0.962985
Target:  5'- gGUCgcgCAcGGCcUUGgcGGCGCGCg -3'
miRNA:   3'- gCGGaaaGUuUCGuAACaaCCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 124741 0.69 0.96878
Target:  5'- uCGCCgccgUCGAgccgcgcacguaguAGCugccgcccguGUUGUUGaGCGCGCg -3'
miRNA:   3'- -GCGGaa--AGUU--------------UCG----------UAACAAC-CGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 66753 0.69 0.969731
Target:  5'- cCGCCUcgUUGAGcGCGUccuugcccagcgUGUUGGCGcCGCc -3'
miRNA:   3'- -GCGGAa-AGUUU-CGUA------------ACAACCGC-GCG- -5'
6775 3' -49.2 NC_001875.2 + 71503 0.69 0.969731
Target:  5'- uGCUuUUUCAAAGCGUUGg-GGCuGCGg -3'
miRNA:   3'- gCGG-AAAGUUUCGUAACaaCCG-CGCg -5'
6775 3' -49.2 NC_001875.2 + 2857 0.69 0.972753
Target:  5'- gCGCCaagaaUUUguAGCAgcgGUUGGgGCGCg -3'
miRNA:   3'- -GCGGa----AAGuuUCGUaa-CAACCgCGCG- -5'
6775 3' -49.2 NC_001875.2 + 31960 0.69 0.97555
Target:  5'- uGCCggcgacgaCGAAcGCGUg--UGGCGCGCg -3'
miRNA:   3'- gCGGaaa-----GUUU-CGUAacaACCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 53139 0.68 0.980506
Target:  5'- cCGCCUaUUGuuGCGcggUGUUGGCcacccGCGCa -3'
miRNA:   3'- -GCGGAaAGUuuCGUa--ACAACCG-----CGCG- -5'
6775 3' -49.2 NC_001875.2 + 69001 0.7 0.955256
Target:  5'- uGCCg--CGggggcAAGCAcgUGgUGGCGCGCu -3'
miRNA:   3'- gCGGaaaGU-----UUCGUa-ACaACCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 25366 0.7 0.946501
Target:  5'- uGUUUUUCAAAGCcgUcaacGUUGGCccgGCGCc -3'
miRNA:   3'- gCGGAAAGUUUCGuaA----CAACCG---CGCG- -5'
6775 3' -49.2 NC_001875.2 + 54993 0.71 0.931375
Target:  5'- gCGCCUUUCGuuucguGGCGauuUUGaccagcgcGGCGCGCu -3'
miRNA:   3'- -GCGGAAAGUu-----UCGU---AACaa------CCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 72629 0.75 0.791375
Target:  5'- gGCCUgcggCAcgccaaacggcgcGGGUaaaaaGUUGUUGGCGCGCa -3'
miRNA:   3'- gCGGAaa--GU-------------UUCG-----UAACAACCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 69607 0.74 0.81134
Target:  5'- gCGUUUggUCAAAaCGUgcUGUUGGCGCGCg -3'
miRNA:   3'- -GCGGAa-AGUUUcGUA--ACAACCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 53920 0.74 0.820567
Target:  5'- gCGCCguugcGGGCGc-GUUGGCGCGCa -3'
miRNA:   3'- -GCGGaaaguUUCGUaaCAACCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 38437 0.73 0.855441
Target:  5'- cCGCCUacgAAAGCAgcaagUGccGGCGCGCg -3'
miRNA:   3'- -GCGGAaagUUUCGUa----ACaaCCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 44248 0.73 0.855441
Target:  5'- aCGCgUUaaUgGAAGCGUUGacaGGCGCGCc -3'
miRNA:   3'- -GCGgAA--AgUUUCGUAACaa-CCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 99411 0.73 0.863607
Target:  5'- gGUCgcgCAgcGCAUUGUUGGCcaGCGCc -3'
miRNA:   3'- gCGGaaaGUuuCGUAACAACCG--CGCG- -5'
6775 3' -49.2 NC_001875.2 + 55294 0.73 0.870755
Target:  5'- gGCCUuguucaccaaaauUUCGcGGCAg---UGGCGCGCg -3'
miRNA:   3'- gCGGA-------------AAGUuUCGUaacaACCGCGCG- -5'
6775 3' -49.2 NC_001875.2 + 10977 0.72 0.91319
Target:  5'- gGCCUgcagUCAagcgacgAAGCGcUGcaGGCGCGCg -3'
miRNA:   3'- gCGGAa---AGU-------UUCGUaACaaCCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.