miRNA display CGI


Results 1 - 20 of 143 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6776 3' -60.2 NC_001875.2 + 88068 1.08 0.000976
Target:  5'- cGCCAGCAGCGGGCCGCACAACUGCGUc -3'
miRNA:   3'- -CGGUCGUCGCCCGGCGUGUUGACGCA- -5'
6776 3' -60.2 NC_001875.2 + 113609 0.83 0.066026
Target:  5'- aGUCGGCGGCGGGCCGCggcgGCAAgaGCGg -3'
miRNA:   3'- -CGGUCGUCGCCCGGCG----UGUUgaCGCa -5'
6776 3' -60.2 NC_001875.2 + 37597 0.8 0.095613
Target:  5'- cGCC-GCGGCcGGCCGCACGGCgGCGUg -3'
miRNA:   3'- -CGGuCGUCGcCCGGCGUGUUGaCGCA- -5'
6776 3' -60.2 NC_001875.2 + 49350 0.8 0.095613
Target:  5'- cGUgGGCGGCGGGCCGUgguGCAACaUGCGg -3'
miRNA:   3'- -CGgUCGUCGCCCGGCG---UGUUG-ACGCa -5'
6776 3' -60.2 NC_001875.2 + 113340 0.78 0.133972
Target:  5'- uCguGCGGCGGGUCggGCGCGGCUGCGUc -3'
miRNA:   3'- cGguCGUCGCCCGG--CGUGUUGACGCA- -5'
6776 3' -60.2 NC_001875.2 + 94618 0.78 0.148381
Target:  5'- aGCgCGGCAGCGGcuuGCUGCACcGCUGCGc -3'
miRNA:   3'- -CG-GUCGUCGCC---CGGCGUGuUGACGCa -5'
6776 3' -60.2 NC_001875.2 + 54453 0.77 0.172645
Target:  5'- cGUUAGCcGCGGcGCCGCACAGCgugUGCGg -3'
miRNA:   3'- -CGGUCGuCGCC-CGGCGUGUUG---ACGCa -5'
6776 3' -60.2 NC_001875.2 + 21087 0.76 0.200387
Target:  5'- cGCgCGGCGGCGGucGCCGCGCuuaAACUGCa- -3'
miRNA:   3'- -CG-GUCGUCGCC--CGGCGUG---UUGACGca -5'
6776 3' -60.2 NC_001875.2 + 91889 0.76 0.200387
Target:  5'- -gCGGCGGCGGGUCGgGCAACcGCGc -3'
miRNA:   3'- cgGUCGUCGCCCGGCgUGUUGaCGCa -5'
6776 3' -60.2 NC_001875.2 + 41340 0.75 0.208925
Target:  5'- cGCCGuGCaAGUGGGCCGCGCGcaguuugaacgcgcGCUGCa- -3'
miRNA:   3'- -CGGU-CG-UCGCCCGGCGUGU--------------UGACGca -5'
6776 3' -60.2 NC_001875.2 + 9594 0.75 0.210464
Target:  5'- gGUUAGCGGUGGGCgCGUGCAACgacGCGUu -3'
miRNA:   3'- -CGGUCGUCGCCCG-GCGUGUUGa--CGCA- -5'
6776 3' -60.2 NC_001875.2 + 65768 0.74 0.237576
Target:  5'- aGCCGGCGGCuGGGCgaGCACGcgcGCgGCGUc -3'
miRNA:   3'- -CGGUCGUCG-CCCGg-CGUGU---UGaCGCA- -5'
6776 3' -60.2 NC_001875.2 + 36899 0.74 0.248621
Target:  5'- cGCCGGCAGgaacUGGGUuguguagUGCGCGACUGCGc -3'
miRNA:   3'- -CGGUCGUC----GCCCG-------GCGUGUUGACGCa -5'
6776 3' -60.2 NC_001875.2 + 84212 0.74 0.249214
Target:  5'- uGCCGGUAGUaGGGCCGCGCGcGCU-CGUc -3'
miRNA:   3'- -CGGUCGUCG-CCCGGCGUGU-UGAcGCA- -5'
6776 3' -60.2 NC_001875.2 + 74507 0.74 0.249214
Target:  5'- cGCCGcgcGCAGCGcuGCCGCaACAAUUGCGUc -3'
miRNA:   3'- -CGGU---CGUCGCc-CGGCG-UGUUGACGCA- -5'
6776 3' -60.2 NC_001875.2 + 73608 0.73 0.2739
Target:  5'- cGCCAacuguuGCGGCGgcGGCUGCgGCGGCUGCGg -3'
miRNA:   3'- -CGGU------CGUCGC--CCGGCG-UGUUGACGCa -5'
6776 3' -60.2 NC_001875.2 + 68840 0.73 0.293673
Target:  5'- uGCCuGGCGGaCGGGUCGCACGcgUGCGc -3'
miRNA:   3'- -CGG-UCGUC-GCCCGGCGUGUugACGCa -5'
6776 3' -60.2 NC_001875.2 + 99395 0.73 0.300507
Target:  5'- aCCGGCggcgccAGCGGGUCGCGCAGC-GCa- -3'
miRNA:   3'- cGGUCG------UCGCCCGGCGUGUUGaCGca -5'
6776 3' -60.2 NC_001875.2 + 118360 0.73 0.307464
Target:  5'- -aCAGCGGCGGcccGCUGUACGAgUGCGa -3'
miRNA:   3'- cgGUCGUCGCC---CGGCGUGUUgACGCa -5'
6776 3' -60.2 NC_001875.2 + 91403 0.72 0.312406
Target:  5'- cGCCAGCGGCagcucgcaauugauGGGCCGCAgCucGCUGUa- -3'
miRNA:   3'- -CGGUCGUCG--------------CCCGGCGU-Gu-UGACGca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.