miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6776 3' -60.2 NC_001875.2 + 56456 0.7 0.453154
Target:  5'- gGCCGGUGGCGGGguCCGCGC----GCGUg -3'
miRNA:   3'- -CGGUCGUCGCCC--GGCGUGuugaCGCA- -5'
6776 3' -60.2 NC_001875.2 + 39166 0.71 0.375565
Target:  5'- gGCC-GCgaGGCGGGCCG-GCggUUGCGUg -3'
miRNA:   3'- -CGGuCG--UCGCCCGGCgUGuuGACGCA- -5'
6776 3' -60.2 NC_001875.2 + 111907 0.71 0.392021
Target:  5'- cGCCGGCcGCuccguguacGGGCCgGUGCAGCUGcCGUa -3'
miRNA:   3'- -CGGUCGuCG---------CCCGG-CGUGUUGAC-GCA- -5'
6776 3' -60.2 NC_001875.2 + 10880 0.71 0.400422
Target:  5'- cGUCGGUGGCGcuGCCGCGCAACguguugGCGc -3'
miRNA:   3'- -CGGUCGUCGCc-CGGCGUGUUGa-----CGCa -5'
6776 3' -60.2 NC_001875.2 + 35904 0.71 0.400422
Target:  5'- uGCCAGCuccAGCGGGuuGUACAGCc-CGa -3'
miRNA:   3'- -CGGUCG---UCGCCCggCGUGUUGacGCa -5'
6776 3' -60.2 NC_001875.2 + 74644 0.7 0.408938
Target:  5'- uGUCGGCAGCgugccauggccgGGGCUGgGCgAGCUGCGc -3'
miRNA:   3'- -CGGUCGUCG------------CCCGGCgUG-UUGACGCa -5'
6776 3' -60.2 NC_001875.2 + 39668 0.7 0.417566
Target:  5'- gGCCGGCGGCGcgcGGCgGCG-AGCUGCu- -3'
miRNA:   3'- -CGGUCGUCGC---CCGgCGUgUUGACGca -5'
6776 3' -60.2 NC_001875.2 + 39321 0.7 0.435149
Target:  5'- uGCCGGCGGCGuGCgCGCGCuGCagGCGc -3'
miRNA:   3'- -CGGUCGUCGCcCG-GCGUGuUGa-CGCa -5'
6776 3' -60.2 NC_001875.2 + 79138 0.7 0.4441
Target:  5'- cGCC-GCGGCGGGCuCGUuuGCcACgGCGUg -3'
miRNA:   3'- -CGGuCGUCGCCCG-GCG--UGuUGaCGCA- -5'
6776 3' -60.2 NC_001875.2 + 124508 0.71 0.367514
Target:  5'- gGCCgGGCAGCaGGUCGCugAcguccacaaACUGCGg -3'
miRNA:   3'- -CGG-UCGUCGcCCGGCGugU---------UGACGCa -5'
6776 3' -60.2 NC_001875.2 + 118304 0.71 0.359583
Target:  5'- cGCCgacagggucgaGGCGGCcGGCCGCGCG-CUGCa- -3'
miRNA:   3'- -CGG-----------UCGUCGcCCGGCGUGUuGACGca -5'
6776 3' -60.2 NC_001875.2 + 53443 0.72 0.336514
Target:  5'- gGCCAGCGcgugcagcacuGCGGGUCGCuCGGCUugGCGa -3'
miRNA:   3'- -CGGUCGU-----------CGCCCGGCGuGUUGA--CGCa -5'
6776 3' -60.2 NC_001875.2 + 37597 0.8 0.095613
Target:  5'- cGCC-GCGGCcGGCCGCACGGCgGCGUg -3'
miRNA:   3'- -CGGuCGUCGcCCGGCGUGUUGaCGCA- -5'
6776 3' -60.2 NC_001875.2 + 54453 0.77 0.172645
Target:  5'- cGUUAGCcGCGGcGCCGCACAGCgugUGCGg -3'
miRNA:   3'- -CGGUCGuCGCC-CGGCGUGUUG---ACGCa -5'
6776 3' -60.2 NC_001875.2 + 36899 0.74 0.248621
Target:  5'- cGCCGGCAGgaacUGGGUuguguagUGCGCGACUGCGc -3'
miRNA:   3'- -CGGUCGUC----GCCCG-------GCGUGUUGACGCa -5'
6776 3' -60.2 NC_001875.2 + 68840 0.73 0.293673
Target:  5'- uGCCuGGCGGaCGGGUCGCACGcgUGCGc -3'
miRNA:   3'- -CGG-UCGUC-GCCCGGCGUGUugACGCa -5'
6776 3' -60.2 NC_001875.2 + 99395 0.73 0.300507
Target:  5'- aCCGGCggcgccAGCGGGUCGCGCAGC-GCa- -3'
miRNA:   3'- cGGUCG------UCGCCCGGCGUGUUGaCGca -5'
6776 3' -60.2 NC_001875.2 + 118360 0.73 0.307464
Target:  5'- -aCAGCGGCGGcccGCUGUACGAgUGCGa -3'
miRNA:   3'- cgGUCGUCGCC---CGGCGUGUUgACGCa -5'
6776 3' -60.2 NC_001875.2 + 91403 0.72 0.312406
Target:  5'- cGCCAGCGGCagcucgcaauugauGGGCCGCAgCucGCUGUa- -3'
miRNA:   3'- -CGGUCGUCG--------------CCCGGCGU-Gu-UGACGca -5'
6776 3' -60.2 NC_001875.2 + 41854 0.72 0.329067
Target:  5'- cGCCgcGGCGGCGaGCUGCaACAACUGCu- -3'
miRNA:   3'- -CGG--UCGUCGCcCGGCG-UGUUGACGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.