miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6776 3' -60.2 NC_001875.2 + 1001 0.69 0.509442
Target:  5'- cGCCAuuGCuGCGGGcCCGUucuuGCAGC-GCGUg -3'
miRNA:   3'- -CGGU--CGuCGCCC-GGCG----UGUUGaCGCA- -5'
6776 3' -60.2 NC_001875.2 + 2668 0.71 0.400422
Target:  5'- cGCCGGCGGCGccUgGgGCAACUGCGg -3'
miRNA:   3'- -CGGUCGUCGCccGgCgUGUUGACGCa -5'
6776 3' -60.2 NC_001875.2 + 3887 0.67 0.629026
Target:  5'- cGCCaAGCugGGCaGGCUGUACAaggcuaagaaGCUGCGc -3'
miRNA:   3'- -CGG-UCG--UCGcCCGGCGUGU----------UGACGCa -5'
6776 3' -60.2 NC_001875.2 + 4535 0.66 0.658428
Target:  5'- cGCCGGCugcGGUuccugcgguuuggGGGCCGCcaGCAAC-GCGa -3'
miRNA:   3'- -CGGUCG---UCG-------------CCCGGCG--UGUUGaCGCa -5'
6776 3' -60.2 NC_001875.2 + 6801 0.67 0.578479
Target:  5'- aCCcGCAGauCGGGUCGCugaacCAGCUGCGc -3'
miRNA:   3'- cGGuCGUC--GCCCGGCGu----GUUGACGCa -5'
6776 3' -60.2 NC_001875.2 + 7265 0.66 0.689658
Target:  5'- gGCCuGGC-GCGGGUCGC-CGAC-GUGUu -3'
miRNA:   3'- -CGG-UCGuCGCCCGGCGuGUUGaCGCA- -5'
6776 3' -60.2 NC_001875.2 + 7999 0.67 0.629026
Target:  5'- aCCGGCGGCuGaUUGCGCAACUGCu- -3'
miRNA:   3'- cGGUCGUCGcCcGGCGUGUUGACGca -5'
6776 3' -60.2 NC_001875.2 + 8307 0.69 0.471556
Target:  5'- gGCCAGCAGCGGGUugggUGCACGccCU-CGa -3'
miRNA:   3'- -CGGUCGUCGCCCG----GCGUGUu-GAcGCa -5'
6776 3' -60.2 NC_001875.2 + 9594 0.75 0.210464
Target:  5'- gGUUAGCGGUGGGCgCGUGCAACgacGCGUu -3'
miRNA:   3'- -CGGUCGUCGCCCG-GCGUGUUGa--CGCA- -5'
6776 3' -60.2 NC_001875.2 + 9920 0.67 0.598632
Target:  5'- aCUGGCGcGCGGGCCGCAaguauuCUaGCGg -3'
miRNA:   3'- cGGUCGU-CGCCCGGCGUguu---GA-CGCa -5'
6776 3' -60.2 NC_001875.2 + 10880 0.71 0.400422
Target:  5'- cGUCGGUGGCGcuGCCGCGCAACguguugGCGc -3'
miRNA:   3'- -CGGUCGUCGCc-CGGCGUGUUGa-----CGCa -5'
6776 3' -60.2 NC_001875.2 + 12291 0.68 0.528861
Target:  5'- cGUguGCAGcCGGcacGCCGC-CGugUGCGUg -3'
miRNA:   3'- -CGguCGUC-GCC---CGGCGuGUugACGCA- -5'
6776 3' -60.2 NC_001875.2 + 12777 0.68 0.558476
Target:  5'- uCCAGCcGgGGcGCCGCGCAcaUGCGc -3'
miRNA:   3'- cGGUCGuCgCC-CGGCGUGUugACGCa -5'
6776 3' -60.2 NC_001875.2 + 13028 0.69 0.471556
Target:  5'- -aCAGUGGCGcGGUCGCACAcgaagcgaaAUUGCGg -3'
miRNA:   3'- cgGUCGUCGC-CCGGCGUGU---------UGACGCa -5'
6776 3' -60.2 NC_001875.2 + 15088 0.69 0.513302
Target:  5'- aCCAGCAGCugcccgccaucagguGGGCCaGCGCAACUa--- -3'
miRNA:   3'- cGGUCGUCG---------------CCCGG-CGUGUUGAcgca -5'
6776 3' -60.2 NC_001875.2 + 15797 0.67 0.58854
Target:  5'- aGCUGGCGGUGGGCggguacUGCACcaccAACaGCGUg -3'
miRNA:   3'- -CGGUCGUCGCCCG------GCGUG----UUGaCGCA- -5'
6776 3' -60.2 NC_001875.2 + 17329 0.69 0.509442
Target:  5'- uGCUGGCGGUugcgccGCCGCGCGACcGCGUc -3'
miRNA:   3'- -CGGUCGUCGcc----CGGCGUGUUGaCGCA- -5'
6776 3' -60.2 NC_001875.2 + 17664 0.68 0.554498
Target:  5'- cGCUGGCGGUGaagcuggcguuuaGCCGaCGCGGCUGCGa -3'
miRNA:   3'- -CGGUCGUCGCc------------CGGC-GUGUUGACGCa -5'
6776 3' -60.2 NC_001875.2 + 21087 0.76 0.200387
Target:  5'- cGCgCGGCGGCGGucGCCGCGCuuaAACUGCa- -3'
miRNA:   3'- -CG-GUCGUCGCC--CGGCGUG---UUGACGca -5'
6776 3' -60.2 NC_001875.2 + 21554 0.69 0.499845
Target:  5'- cGCUuaccGCGGGCCGCGCGAUauuaGCGUg -3'
miRNA:   3'- -CGGucguCGCCCGGCGUGUUGa---CGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.