miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6776 5' -48.4 NC_001875.2 + 88103 1.13 0.007762
Target:  5'- cCGACAACAUGGUGCAGUACUUUGCGGg -3'
miRNA:   3'- -GCUGUUGUACCACGUCAUGAAACGCC- -5'
6776 5' -48.4 NC_001875.2 + 67167 0.77 0.772267
Target:  5'- gGACAGCGUGGUggacaccGCGGUcggguagccGCUUUGCGa -3'
miRNA:   3'- gCUGUUGUACCA-------CGUCA---------UGAAACGCc -5'
6776 5' -48.4 NC_001875.2 + 9963 0.75 0.82987
Target:  5'- aCGACAGCGUGGUGCAauugACggcgUGCaGGc -3'
miRNA:   3'- -GCUGUUGUACCACGUca--UGaa--ACG-CC- -5'
6776 5' -48.4 NC_001875.2 + 10622 0.75 0.85558
Target:  5'- aCGACAACAaccggccggUGccgcccagcGUGCAGUACUUgggcgGCGGa -3'
miRNA:   3'- -GCUGUUGU---------AC---------CACGUCAUGAAa----CGCC- -5'
6776 5' -48.4 NC_001875.2 + 106010 0.75 0.85558
Target:  5'- cCGACuuCAucUGGgcguUGCAGUGCUcgGCGGg -3'
miRNA:   3'- -GCUGuuGU--ACC----ACGUCAUGAaaCGCC- -5'
6776 5' -48.4 NC_001875.2 + 86121 0.72 0.936495
Target:  5'- gCGugGACGUGGccaucgGCAGUGCgcgGCGc -3'
miRNA:   3'- -GCugUUGUACCa-----CGUCAUGaaaCGCc -5'
6776 5' -48.4 NC_001875.2 + 52630 0.72 0.950789
Target:  5'- uCGcACAACAaGGUGCAGgug--UGCGGc -3'
miRNA:   3'- -GC-UGUUGUaCCACGUCaugaaACGCC- -5'
6776 5' -48.4 NC_001875.2 + 77356 0.71 0.959018
Target:  5'- gCGACAACAaGGUcagccaGguGUACgugGCGGa -3'
miRNA:   3'- -GCUGUUGUaCCA------CguCAUGaaaCGCC- -5'
6776 5' -48.4 NC_001875.2 + 56251 0.71 0.959018
Target:  5'- cCGGC-GCGcGGcUGCAGUACUUUGCc- -3'
miRNA:   3'- -GCUGuUGUaCC-ACGUCAUGAAACGcc -5'
6776 5' -48.4 NC_001875.2 + 38503 0.71 0.962755
Target:  5'- aCGACAAgGUGGUGCuGGUGuCgcaGUGGg -3'
miRNA:   3'- -GCUGUUgUACCACG-UCAU-GaaaCGCC- -5'
6776 5' -48.4 NC_001875.2 + 86164 0.7 0.972528
Target:  5'- uGACgGACGUGGUGCGGgAUUUUGaCGc -3'
miRNA:   3'- gCUG-UUGUACCACGUCaUGAAAC-GCc -5'
6776 5' -48.4 NC_001875.2 + 37320 0.7 0.97533
Target:  5'- aCGcCGACG-GGcUGCcGUACUUUGUGGa -3'
miRNA:   3'- -GCuGUUGUaCC-ACGuCAUGAAACGCC- -5'
6776 5' -48.4 NC_001875.2 + 108061 0.7 0.982484
Target:  5'- uCGGCGACcUGG-GCAacGUGCgcucUGCGGg -3'
miRNA:   3'- -GCUGUUGuACCaCGU--CAUGaa--ACGCC- -5'
6776 5' -48.4 NC_001875.2 + 29551 0.7 0.982484
Target:  5'- aCGACAAaauugcCGUGGUGaAGUACgacGCGGc -3'
miRNA:   3'- -GCUGUU------GUACCACgUCAUGaaaCGCC- -5'
6776 5' -48.4 NC_001875.2 + 57127 0.69 0.986473
Target:  5'- uCGGgAuCGUGGUGUAGUGCgugggcgccaacgGCGGg -3'
miRNA:   3'- -GCUgUuGUACCACGUCAUGaaa----------CGCC- -5'
6776 5' -48.4 NC_001875.2 + 105879 0.69 0.989444
Target:  5'- uGACcgaGUcGGUGCAGUACccgaugGCGGg -3'
miRNA:   3'- gCUGuugUA-CCACGUCAUGaaa---CGCC- -5'
6776 5' -48.4 NC_001875.2 + 125978 0.69 0.990788
Target:  5'- gCGAgGGCAaacgcgugcUGGUGCAcUGCUacGCGGg -3'
miRNA:   3'- -GCUgUUGU---------ACCACGUcAUGAaaCGCC- -5'
6776 5' -48.4 NC_001875.2 + 71191 0.68 0.993071
Target:  5'- aCGACGACAcaaaaUGGcacaagUGCGuGUACUaUGUGGa -3'
miRNA:   3'- -GCUGUUGU-----ACC------ACGU-CAUGAaACGCC- -5'
6776 5' -48.4 NC_001875.2 + 111772 0.68 0.994029
Target:  5'- cCGACGAC-UGGUGUcgcuGGUGacg-GCGGu -3'
miRNA:   3'- -GCUGUUGuACCACG----UCAUgaaaCGCC- -5'
6776 5' -48.4 NC_001875.2 + 102994 0.68 0.994029
Target:  5'- gGGC-ACGUGGUGgcgugcggcaAGUGCgcUGCGGg -3'
miRNA:   3'- gCUGuUGUACCACg---------UCAUGaaACGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.