Results 1 - 20 of 36 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6776 | 5' | -48.4 | NC_001875.2 | + | 9963 | 0.75 | 0.82987 |
Target: 5'- aCGACAGCGUGGUGCAauugACggcgUGCaGGc -3' miRNA: 3'- -GCUGUUGUACCACGUca--UGaa--ACG-CC- -5' |
|||||||
6776 | 5' | -48.4 | NC_001875.2 | + | 10622 | 0.75 | 0.85558 |
Target: 5'- aCGACAACAaccggccggUGccgcccagcGUGCAGUACUUgggcgGCGGa -3' miRNA: 3'- -GCUGUUGU---------AC---------CACGUCAUGAAa----CGCC- -5' |
|||||||
6776 | 5' | -48.4 | NC_001875.2 | + | 29551 | 0.7 | 0.982484 |
Target: 5'- aCGACAAaauugcCGUGGUGaAGUACgacGCGGc -3' miRNA: 3'- -GCUGUU------GUACCACgUCAUGaaaCGCC- -5' |
|||||||
6776 | 5' | -48.4 | NC_001875.2 | + | 37320 | 0.7 | 0.97533 |
Target: 5'- aCGcCGACG-GGcUGCcGUACUUUGUGGa -3' miRNA: 3'- -GCuGUUGUaCC-ACGuCAUGAAACGCC- -5' |
|||||||
6776 | 5' | -48.4 | NC_001875.2 | + | 37996 | 0.67 | 0.996855 |
Target: 5'- cCGACAACcguUGGUGCAuUACgg-GCa- -3' miRNA: 3'- -GCUGUUGu--ACCACGUcAUGaaaCGcc -5' |
|||||||
6776 | 5' | -48.4 | NC_001875.2 | + | 38503 | 0.71 | 0.962755 |
Target: 5'- aCGACAAgGUGGUGCuGGUGuCgcaGUGGg -3' miRNA: 3'- -GCUGUUgUACCACG-UCAU-GaaaCGCC- -5' |
|||||||
6776 | 5' | -48.4 | NC_001875.2 | + | 42533 | 0.66 | 0.998471 |
Target: 5'- cCGAagcGCAUGGUgGCGGcGCcaUGCGGc -3' miRNA: 3'- -GCUgu-UGUACCA-CGUCaUGaaACGCC- -5' |
|||||||
6776 | 5' | -48.4 | NC_001875.2 | + | 48493 | 0.67 | 0.997784 |
Target: 5'- cCGACGACAU-GUGUAGcg---UGCGGc -3' miRNA: 3'- -GCUGUUGUAcCACGUCaugaaACGCC- -5' |
|||||||
6776 | 5' | -48.4 | NC_001875.2 | + | 49355 | 0.67 | 0.995625 |
Target: 5'- gCGGCGGgcCGUGGUGCAacaUGCg--GCGGc -3' miRNA: 3'- -GCUGUU--GUACCACGUc--AUGaaaCGCC- -5' |
|||||||
6776 | 5' | -48.4 | NC_001875.2 | + | 50350 | 0.67 | 0.997353 |
Target: 5'- gGGCGACGaGGaauacGCAGUGaacagUUUGCGGg -3' miRNA: 3'- gCUGUUGUaCCa----CGUCAUg----AAACGCC- -5' |
|||||||
6776 | 5' | -48.4 | NC_001875.2 | + | 52630 | 0.72 | 0.950789 |
Target: 5'- uCGcACAACAaGGUGCAGgug--UGCGGc -3' miRNA: 3'- -GC-UGUUGUaCCACGUCaugaaACGCC- -5' |
|||||||
6776 | 5' | -48.4 | NC_001875.2 | + | 55554 | 0.66 | 0.998766 |
Target: 5'- aCGACAugGUGGcuacgcgcgaaaaaaGCAGUcuggAUUUUGUGGc -3' miRNA: 3'- -GCUGUugUACCa--------------CGUCA----UGAAACGCC- -5' |
|||||||
6776 | 5' | -48.4 | NC_001875.2 | + | 56251 | 0.71 | 0.959018 |
Target: 5'- cCGGC-GCGcGGcUGCAGUACUUUGCc- -3' miRNA: 3'- -GCUGuUGUaCC-ACGUCAUGAAACGcc -5' |
|||||||
6776 | 5' | -48.4 | NC_001875.2 | + | 57127 | 0.69 | 0.986473 |
Target: 5'- uCGGgAuCGUGGUGUAGUGCgugggcgccaacgGCGGg -3' miRNA: 3'- -GCUgUuGUACCACGUCAUGaaa----------CGCC- -5' |
|||||||
6776 | 5' | -48.4 | NC_001875.2 | + | 65693 | 0.66 | 0.998154 |
Target: 5'- -cGCAGCAaGGUGUGGUGCguguacauugUGCGa -3' miRNA: 3'- gcUGUUGUaCCACGUCAUGaa--------ACGCc -5' |
|||||||
6776 | 5' | -48.4 | NC_001875.2 | + | 67167 | 0.77 | 0.772267 |
Target: 5'- gGACAGCGUGGUggacaccGCGGUcggguagccGCUUUGCGa -3' miRNA: 3'- gCUGUUGUACCA-------CGUCA---------UGAAACGCc -5' |
|||||||
6776 | 5' | -48.4 | NC_001875.2 | + | 71191 | 0.68 | 0.993071 |
Target: 5'- aCGACGACAcaaaaUGGcacaagUGCGuGUACUaUGUGGa -3' miRNA: 3'- -GCUGUUGU-----ACC------ACGU-CAUGAaACGCC- -5' |
|||||||
6776 | 5' | -48.4 | NC_001875.2 | + | 72578 | 0.67 | 0.996855 |
Target: 5'- gGGCGcuGCG-GGUGCGG-GCgcUGCGGg -3' miRNA: 3'- gCUGU--UGUaCCACGUCaUGaaACGCC- -5' |
|||||||
6776 | 5' | -48.4 | NC_001875.2 | + | 77356 | 0.71 | 0.959018 |
Target: 5'- gCGACAACAaGGUcagccaGguGUACgugGCGGa -3' miRNA: 3'- -GCUGUUGUaCCA------CguCAUGaaaCGCC- -5' |
|||||||
6776 | 5' | -48.4 | NC_001875.2 | + | 81658 | 0.66 | 0.998154 |
Target: 5'- uCGACAACAcGcUGCuGUACgggacgcacgUGCGGa -3' miRNA: 3'- -GCUGUUGUaCcACGuCAUGaa--------ACGCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home