Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6776 | 5' | -48.4 | NC_001875.2 | + | 67167 | 0.77 | 0.772267 |
Target: 5'- gGACAGCGUGGUggacaccGCGGUcggguagccGCUUUGCGa -3' miRNA: 3'- gCUGUUGUACCA-------CGUCA---------UGAAACGCc -5' |
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6776 | 5' | -48.4 | NC_001875.2 | + | 109831 | 0.66 | 0.998969 |
Target: 5'- uGugGAU-UGG-GCAGUGCcg-GCGGa -3' miRNA: 3'- gCugUUGuACCaCGUCAUGaaaCGCC- -5' |
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6776 | 5' | -48.4 | NC_001875.2 | + | 92015 | 0.66 | 0.998741 |
Target: 5'- uGGCGGCGUu-UGC-GUACUUUGCGa -3' miRNA: 3'- gCUGUUGUAccACGuCAUGAAACGCc -5' |
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6776 | 5' | -48.4 | NC_001875.2 | + | 81658 | 0.66 | 0.998154 |
Target: 5'- uCGACAACAcGcUGCuGUACgggacgcacgUGCGGa -3' miRNA: 3'- -GCUGUUGUaCcACGuCAUGaa--------ACGCC- -5' |
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6776 | 5' | -48.4 | NC_001875.2 | + | 100502 | 0.67 | 0.997784 |
Target: 5'- aGACGACAUGGU-CGG-GCUgcGCGu -3' miRNA: 3'- gCUGUUGUACCAcGUCaUGAaaCGCc -5' |
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6776 | 5' | -48.4 | NC_001875.2 | + | 72578 | 0.67 | 0.996855 |
Target: 5'- gGGCGcuGCG-GGUGCGG-GCgcUGCGGg -3' miRNA: 3'- gCUGU--UGUaCCACGUCaUGaaACGCC- -5' |
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6776 | 5' | -48.4 | NC_001875.2 | + | 37996 | 0.67 | 0.996855 |
Target: 5'- cCGACAACcguUGGUGCAuUACgg-GCa- -3' miRNA: 3'- -GCUGUUGu--ACCACGUcAUGaaaCGcc -5' |
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6776 | 5' | -48.4 | NC_001875.2 | + | 131502 | 0.67 | 0.995625 |
Target: 5'- uCGACAgucugcggcGCGcGGUGCAGcgGCUggaaGCGGc -3' miRNA: 3'- -GCUGU---------UGUaCCACGUCa-UGAaa--CGCC- -5' |
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6776 | 5' | -48.4 | NC_001875.2 | + | 111772 | 0.68 | 0.994029 |
Target: 5'- cCGACGAC-UGGUGUcgcuGGUGacg-GCGGu -3' miRNA: 3'- -GCUGUUGuACCACG----UCAUgaaaCGCC- -5' |
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6776 | 5' | -48.4 | NC_001875.2 | + | 37320 | 0.7 | 0.97533 |
Target: 5'- aCGcCGACG-GGcUGCcGUACUUUGUGGa -3' miRNA: 3'- -GCuGUUGUaCC-ACGuCAUGAAACGCC- -5' |
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6776 | 5' | -48.4 | NC_001875.2 | + | 10622 | 0.75 | 0.85558 |
Target: 5'- aCGACAACAaccggccggUGccgcccagcGUGCAGUACUUgggcgGCGGa -3' miRNA: 3'- -GCUGUUGU---------AC---------CACGUCAUGAAa----CGCC- -5' |
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6776 | 5' | -48.4 | NC_001875.2 | + | 106010 | 0.75 | 0.85558 |
Target: 5'- cCGACuuCAucUGGgcguUGCAGUGCUcgGCGGg -3' miRNA: 3'- -GCUGuuGU--ACC----ACGUCAUGAaaCGCC- -5' |
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6776 | 5' | -48.4 | NC_001875.2 | + | 52630 | 0.72 | 0.950789 |
Target: 5'- uCGcACAACAaGGUGCAGgug--UGCGGc -3' miRNA: 3'- -GC-UGUUGUaCCACGUCaugaaACGCC- -5' |
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6776 | 5' | -48.4 | NC_001875.2 | + | 77356 | 0.71 | 0.959018 |
Target: 5'- gCGACAACAaGGUcagccaGguGUACgugGCGGa -3' miRNA: 3'- -GCUGUUGUaCCA------CguCAUGaaaCGCC- -5' |
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6776 | 5' | -48.4 | NC_001875.2 | + | 56251 | 0.71 | 0.959018 |
Target: 5'- cCGGC-GCGcGGcUGCAGUACUUUGCc- -3' miRNA: 3'- -GCUGuUGUaCC-ACGUCAUGAAACGcc -5' |
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6776 | 5' | -48.4 | NC_001875.2 | + | 38503 | 0.71 | 0.962755 |
Target: 5'- aCGACAAgGUGGUGCuGGUGuCgcaGUGGg -3' miRNA: 3'- -GCUGUUgUACCACG-UCAU-GaaaCGCC- -5' |
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6776 | 5' | -48.4 | NC_001875.2 | + | 87549 | 0.66 | 0.998948 |
Target: 5'- aCGAgGGCAUGGUGUgcauagccaaaagGGUGCgcauugGCGc -3' miRNA: 3'- -GCUgUUGUACCACG-------------UCAUGaaa---CGCc -5' |
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6776 | 5' | -48.4 | NC_001875.2 | + | 9963 | 0.75 | 0.82987 |
Target: 5'- aCGACAGCGUGGUGCAauugACggcgUGCaGGc -3' miRNA: 3'- -GCUGUUGUACCACGUca--UGaa--ACG-CC- -5' |
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6776 | 5' | -48.4 | NC_001875.2 | + | 86121 | 0.72 | 0.936495 |
Target: 5'- gCGugGACGUGGccaucgGCAGUGCgcgGCGc -3' miRNA: 3'- -GCugUUGUACCa-----CGUCAUGaaaCGCc -5' |
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6776 | 5' | -48.4 | NC_001875.2 | + | 86164 | 0.7 | 0.972528 |
Target: 5'- uGACgGACGUGGUGCGGgAUUUUGaCGc -3' miRNA: 3'- gCUG-UUGUACCACGUCaUGAAAC-GCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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