miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6778 3' -58.5 NC_001875.2 + 86703 1.08 0.001355
Target:  5'- aGUAGCGGCAAGUGGCGCCCGCUAGACc -3'
miRNA:   3'- -CAUCGCCGUUCACCGCGGGCGAUCUG- -5'
6778 3' -58.5 NC_001875.2 + 29399 0.75 0.273622
Target:  5'- -gGGCGGCAAG-GGCGCCaacccggCGCUcGGCa -3'
miRNA:   3'- caUCGCCGUUCaCCGCGG-------GCGAuCUG- -5'
6778 3' -58.5 NC_001875.2 + 3165 0.74 0.301358
Target:  5'- -gGGCGGCGAGUaggugagccGGCGgCCGCgcaccagAGACa -3'
miRNA:   3'- caUCGCCGUUCA---------CCGCgGGCGa------UCUG- -5'
6778 3' -58.5 NC_001875.2 + 38447 0.73 0.34577
Target:  5'- -aAGCaGCAAGUgccGGCGCgCGCUAGAa -3'
miRNA:   3'- caUCGcCGUUCA---CCGCGgGCGAUCUg -5'
6778 3' -58.5 NC_001875.2 + 84339 0.71 0.429685
Target:  5'- -gAGCGGCGAGUGGCggagcggcuGCgCCGgUAGGu -3'
miRNA:   3'- caUCGCCGUUCACCG---------CG-GGCgAUCUg -5'
6778 3' -58.5 NC_001875.2 + 86354 0.71 0.438717
Target:  5'- gGUGGUGGUGuuUGGCaCCgCGCUAGACg -3'
miRNA:   3'- -CAUCGCCGUucACCGcGG-GCGAUCUG- -5'
6778 3' -58.5 NC_001875.2 + 89813 0.71 0.438717
Target:  5'- -gGGCGGCAGaucGUGGUGCCgGUUaacGGGCc -3'
miRNA:   3'- caUCGCCGUU---CACCGCGGgCGA---UCUG- -5'
6778 3' -58.5 NC_001875.2 + 81477 0.71 0.447857
Target:  5'- --cGCGGUcAGUGGCGCgCGCggcccGACg -3'
miRNA:   3'- cauCGCCGuUCACCGCGgGCGau---CUG- -5'
6778 3' -58.5 NC_001875.2 + 42844 0.7 0.475889
Target:  5'- cGUAGCGcGCAAauccGGCGCgCCGC-AGGCg -3'
miRNA:   3'- -CAUCGC-CGUUca--CCGCG-GGCGaUCUG- -5'
6778 3' -58.5 NC_001875.2 + 68565 0.7 0.475889
Target:  5'- -cGGCGGCGGucgcgcaccgcGUGGCGCC-GCUGGcCg -3'
miRNA:   3'- caUCGCCGUU-----------CACCGCGGgCGAUCuG- -5'
6778 3' -58.5 NC_001875.2 + 118750 0.7 0.475889
Target:  5'- --uGCGGCAcauGGUGGCGgCCUGCUcacgcccGACg -3'
miRNA:   3'- cauCGCCGU---UCACCGC-GGGCGAu------CUG- -5'
6778 3' -58.5 NC_001875.2 + 69362 0.7 0.475889
Target:  5'- -cAGCGGCGu---GCGCCCGCUGcGCg -3'
miRNA:   3'- caUCGCCGUucacCGCGGGCGAUcUG- -5'
6778 3' -58.5 NC_001875.2 + 66119 0.7 0.495054
Target:  5'- -gGGCGGCGAGgcGGCgccGCCCGC-GGAa -3'
miRNA:   3'- caUCGCCGUUCa-CCG---CGGGCGaUCUg -5'
6778 3' -58.5 NC_001875.2 + 34968 0.7 0.524433
Target:  5'- --cGgGGCAGcUGGacCGCCCGCUAGAa -3'
miRNA:   3'- cauCgCCGUUcACC--GCGGGCGAUCUg -5'
6778 3' -58.5 NC_001875.2 + 61587 0.69 0.544383
Target:  5'- uUAGCGGCGAcGgcucgGGCGCCggcggCGCUucGGGCu -3'
miRNA:   3'- cAUCGCCGUU-Ca----CCGCGG-----GCGA--UCUG- -5'
6778 3' -58.5 NC_001875.2 + 98753 0.69 0.544383
Target:  5'- uUAGaCGGCAAGUGcccgacGUGCCgGCaAGACg -3'
miRNA:   3'- cAUC-GCCGUUCAC------CGCGGgCGaUCUG- -5'
6778 3' -58.5 NC_001875.2 + 119056 0.69 0.554451
Target:  5'- -cGGCGuGCGcauGUgcgcGGCGCCCcgGCUGGACa -3'
miRNA:   3'- caUCGC-CGUu--CA----CCGCGGG--CGAUCUG- -5'
6778 3' -58.5 NC_001875.2 + 66026 0.69 0.554451
Target:  5'- -cAGCuGCAAGcgcuUGGCGCCgCGC-AGGCa -3'
miRNA:   3'- caUCGcCGUUC----ACCGCGG-GCGaUCUG- -5'
6778 3' -58.5 NC_001875.2 + 33143 0.69 0.564574
Target:  5'- aUGGCGGCAGGgcaacagcacGGCGUCgCGCUgccgcucgAGGCa -3'
miRNA:   3'- cAUCGCCGUUCa---------CCGCGG-GCGA--------UCUG- -5'
6778 3' -58.5 NC_001875.2 + 57008 0.69 0.564574
Target:  5'- -cAGCGGUccgucaaugGAGUGuaaCGCgCCGCUGGGCg -3'
miRNA:   3'- caUCGCCG---------UUCACc--GCG-GGCGAUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.