miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6778 3' -58.5 NC_001875.2 + 6988 0.66 0.728001
Target:  5'- -cAGCGGgcaucuuugcuuCGAcGUGGCGCgCCaguuGCUGGACg -3'
miRNA:   3'- caUCGCC------------GUU-CACCGCG-GG----CGAUCUG- -5'
6778 3' -58.5 NC_001875.2 + 70196 0.68 0.61577
Target:  5'- -gGGCGGCGAcGgcgaccacugGGCGCCCG--AGGCg -3'
miRNA:   3'- caUCGCCGUU-Ca---------CCGCGGGCgaUCUG- -5'
6778 3' -58.5 NC_001875.2 + 36825 0.68 0.61577
Target:  5'- --cGCGGCAGuUGcGCGCCCGCg---- -3'
miRNA:   3'- cauCGCCGUUcAC-CGCGGGCGaucug -5'
6778 3' -58.5 NC_001875.2 + 40834 0.68 0.636388
Target:  5'- -cGGCcgugGGCAAGacGGCGCUCGCcaAGACg -3'
miRNA:   3'- caUCG----CCGUUCa-CCGCGGGCGa-UCUG- -5'
6778 3' -58.5 NC_001875.2 + 91680 0.67 0.656992
Target:  5'- aUGGUGGC----GGCGCCCGUuuuuuUGGGCg -3'
miRNA:   3'- cAUCGCCGuucaCCGCGGGCG-----AUCUG- -5'
6778 3' -58.5 NC_001875.2 + 39671 0.67 0.667268
Target:  5'- -cGGCGGCGcgcGGcGGCGagCUGCUAGAg -3'
miRNA:   3'- caUCGCCGU---UCaCCGCg-GGCGAUCUg -5'
6778 3' -58.5 NC_001875.2 + 50034 0.67 0.687724
Target:  5'- -gGGCGGCGAGgcGGCcgGCCCGUcgcugucugaAGACa -3'
miRNA:   3'- caUCGCCGUUCa-CCG--CGGGCGa---------UCUG- -5'
6778 3' -58.5 NC_001875.2 + 79757 0.67 0.697886
Target:  5'- cUGGUGGCGAGcaUGuGCGCaaacaCCGCUucGGGCa -3'
miRNA:   3'- cAUCGCCGUUC--AC-CGCG-----GGCGA--UCUG- -5'
6778 3' -58.5 NC_001875.2 + 55314 0.67 0.707993
Target:  5'- --cGCGGC-AGUGGCGCgCGaCggugauGACg -3'
miRNA:   3'- cauCGCCGuUCACCGCGgGC-Gau----CUG- -5'
6778 3' -58.5 NC_001875.2 + 33468 0.68 0.605476
Target:  5'- -cAGUGGUcgaAAGUGGCGCgCCGCgcgcugGGGu -3'
miRNA:   3'- caUCGCCG---UUCACCGCG-GGCGa-----UCUg -5'
6778 3' -58.5 NC_001875.2 + 128952 0.68 0.595202
Target:  5'- -gAGCGGCuaa-GGCGUgaGCUGGGCg -3'
miRNA:   3'- caUCGCCGuucaCCGCGggCGAUCUG- -5'
6778 3' -58.5 NC_001875.2 + 116918 0.69 0.574744
Target:  5'- --cGCGGCGGGUGGCGCacaaugaCG-UAGAg -3'
miRNA:   3'- cauCGCCGUUCACCGCGg------GCgAUCUg -5'
6778 3' -58.5 NC_001875.2 + 84339 0.71 0.429685
Target:  5'- -gAGCGGCGAGUGGCggagcggcuGCgCCGgUAGGu -3'
miRNA:   3'- caUCGCCGUUCACCG---------CG-GGCgAUCUg -5'
6778 3' -58.5 NC_001875.2 + 68565 0.7 0.475889
Target:  5'- -cGGCGGCGGucgcgcaccgcGUGGCGCC-GCUGGcCg -3'
miRNA:   3'- caUCGCCGUU-----------CACCGCGGgCGAUCuG- -5'
6778 3' -58.5 NC_001875.2 + 118750 0.7 0.475889
Target:  5'- --uGCGGCAcauGGUGGCGgCCUGCUcacgcccGACg -3'
miRNA:   3'- cauCGCCGU---UCACCGC-GGGCGAu------CUG- -5'
6778 3' -58.5 NC_001875.2 + 42844 0.7 0.475889
Target:  5'- cGUAGCGcGCAAauccGGCGCgCCGC-AGGCg -3'
miRNA:   3'- -CAUCGC-CGUUca--CCGCG-GGCGaUCUG- -5'
6778 3' -58.5 NC_001875.2 + 34968 0.7 0.524433
Target:  5'- --cGgGGCAGcUGGacCGCCCGCUAGAa -3'
miRNA:   3'- cauCgCCGUUcACC--GCGGGCGAUCUg -5'
6778 3' -58.5 NC_001875.2 + 66026 0.69 0.554451
Target:  5'- -cAGCuGCAAGcgcuUGGCGCCgCGC-AGGCa -3'
miRNA:   3'- caUCGcCGUUC----ACCGCGG-GCGaUCUG- -5'
6778 3' -58.5 NC_001875.2 + 119056 0.69 0.554451
Target:  5'- -cGGCGuGCGcauGUgcgcGGCGCCCcgGCUGGACa -3'
miRNA:   3'- caUCGC-CGUu--CA----CCGCGGG--CGAUCUG- -5'
6778 3' -58.5 NC_001875.2 + 33143 0.69 0.564574
Target:  5'- aUGGCGGCAGGgcaacagcacGGCGUCgCGCUgccgcucgAGGCa -3'
miRNA:   3'- cAUCGCCGUUCa---------CCGCGG-GCGA--------UCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.