miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6778 3' -58.5 NC_001875.2 + 1031 0.66 0.757359
Target:  5'- --cGUGGCGGGgcccgaGGCGCacagCGUUGGGCg -3'
miRNA:   3'- cauCGCCGUUCa-----CCGCGg---GCGAUCUG- -5'
6778 3' -58.5 NC_001875.2 + 3165 0.74 0.301358
Target:  5'- -gGGCGGCGAGUaggugagccGGCGgCCGCgcaccagAGACa -3'
miRNA:   3'- caUCGCCGUUCA---------CCGCgGGCGa------UCUG- -5'
6778 3' -58.5 NC_001875.2 + 6988 0.66 0.728001
Target:  5'- -cAGCGGgcaucuuugcuuCGAcGUGGCGCgCCaguuGCUGGACg -3'
miRNA:   3'- caUCGCC------------GUU-CACCGCG-GG----CGAUCUG- -5'
6778 3' -58.5 NC_001875.2 + 10464 0.66 0.728001
Target:  5'- -cGGCGGCGcgcucAGUgaauGGCGCuuGCUGaACg -3'
miRNA:   3'- caUCGCCGU-----UCA----CCGCGggCGAUcUG- -5'
6778 3' -58.5 NC_001875.2 + 29399 0.75 0.273622
Target:  5'- -gGGCGGCAAG-GGCGCCaacccggCGCUcGGCa -3'
miRNA:   3'- caUCGCCGUUCaCCGCGG-------GCGAuCUG- -5'
6778 3' -58.5 NC_001875.2 + 32786 0.66 0.757359
Target:  5'- --cGCGGCGuGGgcgGGCGCCgCGCc-GGCa -3'
miRNA:   3'- cauCGCCGU-UCa--CCGCGG-GCGauCUG- -5'
6778 3' -58.5 NC_001875.2 + 33143 0.69 0.564574
Target:  5'- aUGGCGGCAGGgcaacagcacGGCGUCgCGCUgccgcucgAGGCa -3'
miRNA:   3'- cAUCGCCGUUCa---------CCGCGG-GCGA--------UCUG- -5'
6778 3' -58.5 NC_001875.2 + 33468 0.68 0.605476
Target:  5'- -cAGUGGUcgaAAGUGGCGCgCCGCgcgcugGGGu -3'
miRNA:   3'- caUCGCCG---UUCACCGCG-GGCGa-----UCUg -5'
6778 3' -58.5 NC_001875.2 + 34968 0.7 0.524433
Target:  5'- --cGgGGCAGcUGGacCGCCCGCUAGAa -3'
miRNA:   3'- cauCgCCGUUcACC--GCGGGCGAUCUg -5'
6778 3' -58.5 NC_001875.2 + 36825 0.68 0.61577
Target:  5'- --cGCGGCAGuUGcGCGCCCGCg---- -3'
miRNA:   3'- cauCGCCGUUcAC-CGCGGGCGaucug -5'
6778 3' -58.5 NC_001875.2 + 38447 0.73 0.34577
Target:  5'- -aAGCaGCAAGUgccGGCGCgCGCUAGAa -3'
miRNA:   3'- caUCGcCGUUCA---CCGCGgGCGAUCUg -5'
6778 3' -58.5 NC_001875.2 + 38753 0.69 0.584956
Target:  5'- -aAGCGGguAGgugaagucGGCGuCCUGUUGGGCg -3'
miRNA:   3'- caUCGCCguUCa-------CCGC-GGGCGAUCUG- -5'
6778 3' -58.5 NC_001875.2 + 39671 0.67 0.667268
Target:  5'- -cGGCGGCGcgcGGcGGCGagCUGCUAGAg -3'
miRNA:   3'- caUCGCCGU---UCaCCGCg-GGCGAUCUg -5'
6778 3' -58.5 NC_001875.2 + 40834 0.68 0.636388
Target:  5'- -cGGCcgugGGCAAGacGGCGCUCGCcaAGACg -3'
miRNA:   3'- caUCG----CCGUUCa-CCGCGGGCGa-UCUG- -5'
6778 3' -58.5 NC_001875.2 + 42844 0.7 0.475889
Target:  5'- cGUAGCGcGCAAauccGGCGCgCCGC-AGGCg -3'
miRNA:   3'- -CAUCGC-CGUUca--CCGCG-GGCGaUCUG- -5'
6778 3' -58.5 NC_001875.2 + 44112 0.68 0.59315
Target:  5'- gGUGGCGGCGAGUuguccgcgguuuGCGUCCGC-GGAg -3'
miRNA:   3'- -CAUCGCCGUUCAc-----------CGCGGGCGaUCUg -5'
6778 3' -58.5 NC_001875.2 + 48022 0.66 0.757359
Target:  5'- gGUGGCGGCccacGUGGC-CgCCGCccacAGGCa -3'
miRNA:   3'- -CAUCGCCGuu--CACCGcG-GGCGa---UCUG- -5'
6778 3' -58.5 NC_001875.2 + 48391 0.66 0.737883
Target:  5'- --cGCGGCGAcaGGUGCCgGCUcgGGAg -3'
miRNA:   3'- cauCGCCGUUcaCCGCGGgCGA--UCUg -5'
6778 3' -58.5 NC_001875.2 + 50034 0.67 0.687724
Target:  5'- -gGGCGGCGAGgcGGCcgGCCCGUcgcugucugaAGACa -3'
miRNA:   3'- caUCGCCGUUCa-CCG--CGGGCGa---------UCUG- -5'
6778 3' -58.5 NC_001875.2 + 55314 0.67 0.707993
Target:  5'- --cGCGGC-AGUGGCGCgCGaCggugauGACg -3'
miRNA:   3'- cauCGCCGuUCACCGCGgGC-Gau----CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.