miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6779 3' -49.7 NC_001875.2 + 86571 1.06 0.011822
Target:  5'- gAAAAGCACAUUAACCGCGCCAUCCAGc -3'
miRNA:   3'- -UUUUCGUGUAAUUGGCGCGGUAGGUC- -5'
6779 3' -49.7 NC_001875.2 + 114022 0.81 0.384634
Target:  5'- ---cGCGCAUggcGGCCGCGCgGUCCAGa -3'
miRNA:   3'- uuuuCGUGUAa--UUGGCGCGgUAGGUC- -5'
6779 3' -49.7 NC_001875.2 + 42534 0.77 0.586537
Target:  5'- cGAAGCGCAUggUGGCgGCGCCAUgCGGc -3'
miRNA:   3'- uUUUCGUGUA--AUUGgCGCGGUAgGUC- -5'
6779 3' -49.7 NC_001875.2 + 80649 0.77 0.619439
Target:  5'- --cGGCGCcagAACCGCGCCGUCguGg -3'
miRNA:   3'- uuuUCGUGuaaUUGGCGCGGUAGguC- -5'
6779 3' -49.7 NC_001875.2 + 52355 0.76 0.652441
Target:  5'- --cGGCGCGU--GCCGCGCCAgcgUCCAa -3'
miRNA:   3'- uuuUCGUGUAauUGGCGCGGU---AGGUc -5'
6779 3' -49.7 NC_001875.2 + 33691 0.75 0.696129
Target:  5'- ---cGCACAc-GACCGCGUCGUCCAc -3'
miRNA:   3'- uuuuCGUGUaaUUGGCGCGGUAGGUc -5'
6779 3' -49.7 NC_001875.2 + 366 0.75 0.717645
Target:  5'- ---uGCACGUUGGCCGCGCgAUUguGc -3'
miRNA:   3'- uuuuCGUGUAAUUGGCGCGgUAGguC- -5'
6779 3' -49.7 NC_001875.2 + 119828 0.73 0.827497
Target:  5'- cAAAGCGuuUGUUGGCCGCGCUcgCCAc -3'
miRNA:   3'- uUUUCGU--GUAAUUGGCGCGGuaGGUc -5'
6779 3' -49.7 NC_001875.2 + 76337 0.72 0.853736
Target:  5'- -cGAGCAgGU--GCUGCGCCA-CCAGg -3'
miRNA:   3'- uuUUCGUgUAauUGGCGCGGUaGGUC- -5'
6779 3' -49.7 NC_001875.2 + 71931 0.72 0.862029
Target:  5'- -cGAGCGCcUUGACCGCGCgcUCCGc -3'
miRNA:   3'- uuUUCGUGuAAUUGGCGCGguAGGUc -5'
6779 3' -49.7 NC_001875.2 + 2300 0.72 0.870083
Target:  5'- ---cGCGCcgUGGCCGCGCgCAgcucggCCAGc -3'
miRNA:   3'- uuuuCGUGuaAUUGGCGCG-GUa-----GGUC- -5'
6779 3' -49.7 NC_001875.2 + 14572 0.72 0.870083
Target:  5'- uGAAGCGCAUcGGCCGCGgCAgcgaCAGa -3'
miRNA:   3'- uUUUCGUGUAaUUGGCGCgGUag--GUC- -5'
6779 3' -49.7 NC_001875.2 + 71928 0.72 0.87789
Target:  5'- -uGAGCguaACGUUAuccACCGCGCCAgccucuUCCGGu -3'
miRNA:   3'- uuUUCG---UGUAAU---UGGCGCGGU------AGGUC- -5'
6779 3' -49.7 NC_001875.2 + 57579 0.71 0.885444
Target:  5'- --cGGCGCGgcg-UCGCGCUGUCCAGa -3'
miRNA:   3'- uuuUCGUGUaauuGGCGCGGUAGGUC- -5'
6779 3' -49.7 NC_001875.2 + 84938 0.71 0.885444
Target:  5'- aAGAAGCAUAgugUGGCCGCGCCcuuAUgCAa -3'
miRNA:   3'- -UUUUCGUGUa--AUUGGCGCGG---UAgGUc -5'
6779 3' -49.7 NC_001875.2 + 115760 0.71 0.885444
Target:  5'- --cAGCGCAUUcaAACCGCcgcgaGCCGUCCu- -3'
miRNA:   3'- uuuUCGUGUAA--UUGGCG-----CGGUAGGuc -5'
6779 3' -49.7 NC_001875.2 + 48495 0.71 0.892738
Target:  5'- -uGAGCGCGUUAAUggacuauuuuggCGCGCCGcCCGGc -3'
miRNA:   3'- uuUUCGUGUAAUUG------------GCGCGGUaGGUC- -5'
6779 3' -49.7 NC_001875.2 + 4451 0.71 0.899769
Target:  5'- --cAGCACuUUGGCCaggcucugaGCGCCGUCCGc -3'
miRNA:   3'- uuuUCGUGuAAUUGG---------CGCGGUAGGUc -5'
6779 3' -49.7 NC_001875.2 + 77253 0.71 0.913021
Target:  5'- ---cGCGCcgUGGgCGCGCCG-CCGGg -3'
miRNA:   3'- uuuuCGUGuaAUUgGCGCGGUaGGUC- -5'
6779 3' -49.7 NC_001875.2 + 58064 0.71 0.913021
Target:  5'- ---uGCACGcUGACCGCGCUGUCg-- -3'
miRNA:   3'- uuuuCGUGUaAUUGGCGCGGUAGguc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.