miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6779 3' -49.7 NC_001875.2 + 366 0.75 0.717645
Target:  5'- ---uGCACGUUGGCCGCGCgAUUguGc -3'
miRNA:   3'- uuuuCGUGUAAUUGGCGCGgUAGguC- -5'
6779 3' -49.7 NC_001875.2 + 2300 0.72 0.870083
Target:  5'- ---cGCGCcgUGGCCGCGCgCAgcucggCCAGc -3'
miRNA:   3'- uuuuCGUGuaAUUGGCGCG-GUa-----GGUC- -5'
6779 3' -49.7 NC_001875.2 + 3868 0.7 0.925179
Target:  5'- --uGGCACGgcagcACCGCGCCG-CCAa -3'
miRNA:   3'- uuuUCGUGUaau--UGGCGCGGUaGGUc -5'
6779 3' -49.7 NC_001875.2 + 4451 0.71 0.899769
Target:  5'- --cAGCACuUUGGCCaggcucugaGCGCCGUCCGc -3'
miRNA:   3'- uuuUCGUGuAAUUGG---------CGCGGUAGGUc -5'
6779 3' -49.7 NC_001875.2 + 7113 0.67 0.984765
Target:  5'- --uGGCcgACAUUGACCgccacGCGCCGcuugCCAGg -3'
miRNA:   3'- uuuUCG--UGUAAUUGG-----CGCGGUa---GGUC- -5'
6779 3' -49.7 NC_001875.2 + 9041 0.66 0.989715
Target:  5'- uGGAGC-CGccGGCCGCGCCGguuUCCGc -3'
miRNA:   3'- uUUUCGuGUaaUUGGCGCGGU---AGGUc -5'
6779 3' -49.7 NC_001875.2 + 9522 0.68 0.966415
Target:  5'- -uGGGCGCGgaAGCCGCGCCcgaUAGg -3'
miRNA:   3'- uuUUCGUGUaaUUGGCGCGGuagGUC- -5'
6779 3' -49.7 NC_001875.2 + 11200 0.67 0.980575
Target:  5'- uGGAGCACGac-GCCGCGCCGgaCgAGa -3'
miRNA:   3'- uUUUCGUGUaauUGGCGCGGUa-GgUC- -5'
6779 3' -49.7 NC_001875.2 + 12649 0.66 0.993308
Target:  5'- -uGAGCAUaaacaugcuguuGUUGACgCGCGCCGcguuggCCGGg -3'
miRNA:   3'- uuUUCGUG------------UAAUUG-GCGCGGUa-----GGUC- -5'
6779 3' -49.7 NC_001875.2 + 14572 0.72 0.870083
Target:  5'- uGAAGCGCAUcGGCCGCGgCAgcgaCAGa -3'
miRNA:   3'- uUUUCGUGUAaUUGGCGCgGUag--GUC- -5'
6779 3' -49.7 NC_001875.2 + 16371 0.68 0.969703
Target:  5'- ---cGC-CAaUGGCCGCGCCcgCUAGc -3'
miRNA:   3'- uuuuCGuGUaAUUGGCGCGGuaGGUC- -5'
6779 3' -49.7 NC_001875.2 + 18280 0.66 0.992243
Target:  5'- ---cGCGCcgUgcgcGACCGCGCCGUUg-- -3'
miRNA:   3'- uuuuCGUGuaA----UUGGCGCGGUAGguc -5'
6779 3' -49.7 NC_001875.2 + 21201 0.69 0.950755
Target:  5'- --cGGCACG---GCCaGCGCCA-CCAGg -3'
miRNA:   3'- uuuUCGUGUaauUGG-CGCGGUaGGUC- -5'
6779 3' -49.7 NC_001875.2 + 21958 0.7 0.936232
Target:  5'- --cGGCGCGgggaugGGCgGCGCCAgcgCCAGc -3'
miRNA:   3'- uuuUCGUGUaa----UUGgCGCGGUa--GGUC- -5'
6779 3' -49.7 NC_001875.2 + 22588 0.66 0.992243
Target:  5'- --cGGCGCGUUGGCCG-GCCggCUg- -3'
miRNA:   3'- uuuUCGUGUAAUUGGCgCGGuaGGuc -5'
6779 3' -49.7 NC_001875.2 + 23281 0.66 0.993308
Target:  5'- --cAGCACc---GCCGCGCCguaaauGUCCAc -3'
miRNA:   3'- uuuUCGUGuaauUGGCGCGG------UAGGUc -5'
6779 3' -49.7 NC_001875.2 + 26774 0.68 0.969703
Target:  5'- --uAGCACucGUUGAgcgaCGCGCCGUCgAGg -3'
miRNA:   3'- uuuUCGUG--UAAUUg---GCGCGGUAGgUC- -5'
6779 3' -49.7 NC_001875.2 + 32843 0.68 0.972755
Target:  5'- --uGGCACcaaAACCugGUGCCGUCCGGc -3'
miRNA:   3'- uuuUCGUGuaaUUGG--CGCGGUAGGUC- -5'
6779 3' -49.7 NC_001875.2 + 33445 0.68 0.978182
Target:  5'- -uGAGCGCGUUcAgCGCGgCCggCCAGu -3'
miRNA:   3'- uuUUCGUGUAAuUgGCGC-GGuaGGUC- -5'
6779 3' -49.7 NC_001875.2 + 33691 0.75 0.696129
Target:  5'- ---cGCACAc-GACCGCGUCGUCCAc -3'
miRNA:   3'- uuuuCGUGUaaUUGGCGCGGUAGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.