miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6779 3' -49.7 NC_001875.2 + 43116 0.67 0.982766
Target:  5'- --cGGCAgGUUGgaGCCGcCGCgCAUCCAc -3'
miRNA:   3'- uuuUCGUgUAAU--UGGC-GCG-GUAGGUc -5'
6779 3' -49.7 NC_001875.2 + 74149 0.68 0.972755
Target:  5'- cGAGGGCGCGgcgcCCGcCGCCG-CCAGc -3'
miRNA:   3'- -UUUUCGUGUaauuGGC-GCGGUaGGUC- -5'
6779 3' -49.7 NC_001875.2 + 37114 0.68 0.975306
Target:  5'- -cGGGCGCGgc-GCCGCGCCGgcguuugcgucuuUCCGc -3'
miRNA:   3'- uuUUCGUGUaauUGGCGCGGU-------------AGGUc -5'
6779 3' -49.7 NC_001875.2 + 33445 0.68 0.978182
Target:  5'- -uGAGCGCGUUcAgCGCGgCCggCCAGu -3'
miRNA:   3'- uuUUCGUGUAAuUgGCGC-GGuaGGUC- -5'
6779 3' -49.7 NC_001875.2 + 79375 0.68 0.978182
Target:  5'- ----cCACAUUAGCUGCGUCAgUUCGGg -3'
miRNA:   3'- uuuucGUGUAAUUGGCGCGGU-AGGUC- -5'
6779 3' -49.7 NC_001875.2 + 40427 0.68 0.978182
Target:  5'- cGAGGgGC--UGACgCGCGCCAUCgAGa -3'
miRNA:   3'- uUUUCgUGuaAUUG-GCGCGGUAGgUC- -5'
6779 3' -49.7 NC_001875.2 + 48364 0.68 0.978182
Target:  5'- --cAGCGCGcUAAUCGCGCgccCGUCCGa -3'
miRNA:   3'- uuuUCGUGUaAUUGGCGCG---GUAGGUc -5'
6779 3' -49.7 NC_001875.2 + 11200 0.67 0.980575
Target:  5'- uGGAGCACGac-GCCGCGCCGgaCgAGa -3'
miRNA:   3'- uUUUCGUGUaauUGGCGCGGUa-GgUC- -5'
6779 3' -49.7 NC_001875.2 + 95727 0.67 0.982766
Target:  5'- cGAAGUGCAUgAGCgGCGCCG-CCGc -3'
miRNA:   3'- uUUUCGUGUAaUUGgCGCGGUaGGUc -5'
6779 3' -49.7 NC_001875.2 + 32843 0.68 0.972755
Target:  5'- --uGGCACcaaAACCugGUGCCGUCCGGc -3'
miRNA:   3'- uuuUCGUGuaaUUGG--CGCGGUAGGUC- -5'
6779 3' -49.7 NC_001875.2 + 43423 0.68 0.969703
Target:  5'- ---uGCGCGUgcguGCCGUccucgGCCAUCCAc -3'
miRNA:   3'- uuuuCGUGUAau--UGGCG-----CGGUAGGUc -5'
6779 3' -49.7 NC_001875.2 + 26774 0.68 0.969703
Target:  5'- --uAGCACucGUUGAgcgaCGCGCCGUCgAGg -3'
miRNA:   3'- uuuUCGUG--UAAUUg---GCGCGGUAGgUC- -5'
6779 3' -49.7 NC_001875.2 + 80649 0.77 0.619439
Target:  5'- --cGGCGCcagAACCGCGCCGUCguGg -3'
miRNA:   3'- uuuUCGUGuaaUUGGCGCGGUAGguC- -5'
6779 3' -49.7 NC_001875.2 + 33691 0.75 0.696129
Target:  5'- ---cGCACAc-GACCGCGUCGUCCAc -3'
miRNA:   3'- uuuuCGUGUaaUUGGCGCGGUAGGUc -5'
6779 3' -49.7 NC_001875.2 + 71931 0.72 0.862029
Target:  5'- -cGAGCGCcUUGACCGCGCgcUCCGc -3'
miRNA:   3'- uuUUCGUGuAAUUGGCGCGguAGGUc -5'
6779 3' -49.7 NC_001875.2 + 48495 0.71 0.892738
Target:  5'- -uGAGCGCGUUAAUggacuauuuuggCGCGCCGcCCGGc -3'
miRNA:   3'- uuUUCGUGUAAUUG------------GCGCGGUaGGUC- -5'
6779 3' -49.7 NC_001875.2 + 4451 0.71 0.899769
Target:  5'- --cAGCACuUUGGCCaggcucugaGCGCCGUCCGc -3'
miRNA:   3'- uuuUCGUGuAAUUGG---------CGCGGUAGGUc -5'
6779 3' -49.7 NC_001875.2 + 128739 0.69 0.962882
Target:  5'- ---uGCGCGcgAGCCGCGCC--CCGGc -3'
miRNA:   3'- uuuuCGUGUaaUUGGCGCGGuaGGUC- -5'
6779 3' -49.7 NC_001875.2 + 99354 0.68 0.966415
Target:  5'- ---cGCGCAacUUGGgCGCGCCcgCCAa -3'
miRNA:   3'- uuuuCGUGU--AAUUgGCGCGGuaGGUc -5'
6779 3' -49.7 NC_001875.2 + 77687 0.68 0.966415
Target:  5'- -cGAGCGCGUauuugcgcGACUGcCGCCGUCCGc -3'
miRNA:   3'- uuUUCGUGUAa-------UUGGC-GCGGUAGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.