miRNA display CGI


Results 21 - 40 of 146 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6780 3' -57.2 NC_001875.2 + 3182 0.72 0.510953
Target:  5'- gCCGGCGGCCGCgcaccagagacaGGUU-GCGgCGGCg -3'
miRNA:   3'- -GGCUGCUGGUGaa----------CCAAcCGCgGCCG- -5'
6780 3' -57.2 NC_001875.2 + 123343 0.72 0.514797
Target:  5'- gCGGCGcCCACacGGacGGCGCCcGGCg -3'
miRNA:   3'- gGCUGCuGGUGaaCCaaCCGCGG-CCG- -5'
6780 3' -57.2 NC_001875.2 + 117363 0.72 0.514797
Target:  5'- gCCGGCuGGCCGucgGGgaGGCGCCGaGCu -3'
miRNA:   3'- -GGCUG-CUGGUgaaCCaaCCGCGGC-CG- -5'
6780 3' -57.2 NC_001875.2 + 111147 0.72 0.524457
Target:  5'- uUGGCGGCgGCUUGGUgucacGGCGCUGcuuaGCg -3'
miRNA:   3'- gGCUGCUGgUGAACCAa----CCGCGGC----CG- -5'
6780 3' -57.2 NC_001875.2 + 40127 0.72 0.534185
Target:  5'- gCCGACGGCCGucacCUccaUGGgcUGGCaccgcacgGCCGGCa -3'
miRNA:   3'- -GGCUGCUGGU----GA---ACCa-ACCG--------CGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 54575 0.71 0.573676
Target:  5'- gCGGCGGCCGCUUcgcccGGcgGcGCGCCcacGGCg -3'
miRNA:   3'- gGCUGCUGGUGAA-----CCaaC-CGCGG---CCG- -5'
6780 3' -57.2 NC_001875.2 + 103114 0.71 0.573676
Target:  5'- aUCGugGcUCGCUUGGc-GGCGgCGGCg -3'
miRNA:   3'- -GGCugCuGGUGAACCaaCCGCgGCCG- -5'
6780 3' -57.2 NC_001875.2 + 56860 0.71 0.593686
Target:  5'- gUGAUGAacaGCUUGGUguuUGGCugcuaGCCGGCa -3'
miRNA:   3'- gGCUGCUgg-UGAACCA---ACCG-----CGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 107513 0.71 0.593686
Target:  5'- gCCG-CGGCaCGCUU-GUUGGCGCCGu- -3'
miRNA:   3'- -GGCuGCUG-GUGAAcCAACCGCGGCcg -5'
6780 3' -57.2 NC_001875.2 + 1507 0.71 0.602729
Target:  5'- gCGACGACC-CUgccuuuugGGUgcgGGCGCucucgaaCGGCg -3'
miRNA:   3'- gGCUGCUGGuGAa-------CCAa--CCGCG-------GCCG- -5'
6780 3' -57.2 NC_001875.2 + 5306 0.71 0.604742
Target:  5'- cCCGACGACCACUccauugcgcgcuaccUgcucgccgagugcgGGgcGGUGCUGGUc -3'
miRNA:   3'- -GGCUGCUGGUGA---------------A--------------CCaaCCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 115528 0.71 0.612798
Target:  5'- aUGGCGACCAaauggGGUUGGCgGCCuauuccacagaugGGCu -3'
miRNA:   3'- gGCUGCUGGUgaa--CCAACCG-CGG-------------CCG- -5'
6780 3' -57.2 NC_001875.2 + 75555 0.71 0.612798
Target:  5'- gUCGGCGAUgGCgucggcgUUGGUgauagcgcUGGCGUCGGCn -3'
miRNA:   3'- -GGCUGCUGgUG-------AACCA--------ACCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 30223 0.71 0.612798
Target:  5'- gUGGCGACCACUuuguacgUGGUcgcguUGaCGCUGGCc -3'
miRNA:   3'- gGCUGCUGGUGA-------ACCA-----ACcGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 101218 0.71 0.613805
Target:  5'- gUCGACGGCU--UUGGUUGcGCGCaguuuaaaGGCg -3'
miRNA:   3'- -GGCUGCUGGugAACCAAC-CGCGg-------CCG- -5'
6780 3' -57.2 NC_001875.2 + 16281 0.71 0.613805
Target:  5'- cCCGGCGACCGCac-GUccaUGuGCGCCaGCa -3'
miRNA:   3'- -GGCUGCUGGUGaacCA---AC-CGCGGcCG- -5'
6780 3' -57.2 NC_001875.2 + 2648 0.7 0.623889
Target:  5'- aCGgacACGuCUACUUGc--GGCGCCGGCg -3'
miRNA:   3'- gGC---UGCuGGUGAACcaaCCGCGGCCG- -5'
6780 3' -57.2 NC_001875.2 + 59595 0.7 0.63196
Target:  5'- gCCGACGugCGCgagcacgGGCGCUuuGGCg -3'
miRNA:   3'- -GGCUGCugGUGaaccaa-CCGCGG--CCG- -5'
6780 3' -57.2 NC_001875.2 + 75513 0.7 0.632969
Target:  5'- gUCGGCGAUgGCgucggcgUUGGUgaUGGCGuuGGUg -3'
miRNA:   3'- -GGCUGCUGgUG-------AACCA--ACCGCggCCG- -5'
6780 3' -57.2 NC_001875.2 + 43791 0.7 0.633978
Target:  5'- gCUGGCGACaaACUUGagcGUUGGCacggcuuuGCCGGCu -3'
miRNA:   3'- -GGCUGCUGg-UGAAC---CAACCG--------CGGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.