miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6780 5' -53.6 NC_001875.2 + 93780 0.69 0.81191
Target:  5'- aCGGgCGGCaGCGCAAAAAGuggaugauGGCGu-- -3'
miRNA:   3'- -GCCgGCCG-CGCGUUUUUCu-------UCGCuua -5'
6780 5' -53.6 NC_001875.2 + 121929 0.69 0.81191
Target:  5'- gCGGCCcGCGCGCc---AGucGCGAGUa -3'
miRNA:   3'- -GCCGGcCGCGCGuuuuUCuuCGCUUA- -5'
6780 5' -53.6 NC_001875.2 + 131298 0.69 0.820893
Target:  5'- -aGCUGGacgcCGCGCAAAAAGAAGCu--- -3'
miRNA:   3'- gcCGGCC----GCGCGUUUUUCUUCGcuua -5'
6780 5' -53.6 NC_001875.2 + 131752 0.69 0.820893
Target:  5'- gGGCCGGCG-GCGGAucG-GGCGGc- -3'
miRNA:   3'- gCCGGCCGCgCGUUUuuCuUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 131512 0.69 0.838295
Target:  5'- gCGGCgcgCGGUGCaGCGGcuGGAAGCGGc- -3'
miRNA:   3'- -GCCG---GCCGCG-CGUUuuUCUUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 58897 0.68 0.854891
Target:  5'- aGGCCGcgaacGCGCGCuacGAAGccGCGGAc -3'
miRNA:   3'- gCCGGC-----CGCGCGuu-UUUCuuCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 3108 0.68 0.862867
Target:  5'- gGGCgCGGCucgcgGCGCAGAccuGGGcGGCGAAg -3'
miRNA:   3'- gCCG-GCCG-----CGCGUUU---UUCuUCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 64727 0.68 0.870619
Target:  5'- uGGCCaaGGCGgGCGAcguGGGcGAAGCGAu- -3'
miRNA:   3'- gCCGG--CCGCgCGUU---UUU-CUUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 10632 0.68 0.870619
Target:  5'- cCGGCCGGUGCcgcccagcguGCAGuacuuGGGcGGCGGAc -3'
miRNA:   3'- -GCCGGCCGCG----------CGUUu----UUCuUCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 80617 0.68 0.870619
Target:  5'- aCGGUgGGCGCGCGGAAcGcgcgcucgacGGGCGGc- -3'
miRNA:   3'- -GCCGgCCGCGCGUUUUuC----------UUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 118320 0.68 0.870619
Target:  5'- gCGGCCGGcCGCGCGcu--GcAGGUGAu- -3'
miRNA:   3'- -GCCGGCC-GCGCGUuuuuC-UUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 79100 0.68 0.870619
Target:  5'- aCGGCa-GCGCGCAAAugcuGGCGAu- -3'
miRNA:   3'- -GCCGgcCGCGCGUUUuucuUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 98899 0.68 0.878141
Target:  5'- uGGCgagCGGCGCGCAAAcuGAcGCGc-- -3'
miRNA:   3'- gCCG---GCCGCGCGUUUuuCUuCGCuua -5'
6780 5' -53.6 NC_001875.2 + 93197 0.68 0.878141
Target:  5'- cCGGCCaGCGCGCAAuacGcGGCGu-- -3'
miRNA:   3'- -GCCGGcCGCGCGUUuuuCuUCGCuua -5'
6780 5' -53.6 NC_001875.2 + 32394 0.68 0.878141
Target:  5'- aGGgCGGCGaCGCAAAAGuuguGGGCGAc- -3'
miRNA:   3'- gCCgGCCGC-GCGUUUUUc---UUCGCUua -5'
6780 5' -53.6 NC_001875.2 + 11631 0.68 0.878141
Target:  5'- gGGuuGGCGCGCAucguuguGuucAGCGGAa -3'
miRNA:   3'- gCCggCCGCGCGUuuuu---Cu--UCGCUUa -5'
6780 5' -53.6 NC_001875.2 + 57578 0.68 0.878141
Target:  5'- cCGGCgCGGCGuCGCGcuGuccAGAAGCGu-- -3'
miRNA:   3'- -GCCG-GCCGC-GCGUuuU---UCUUCGCuua -5'
6780 5' -53.6 NC_001875.2 + 100843 0.68 0.880351
Target:  5'- uCGGCCGcGCGCGCGuaaucuugcuuuuuGAGcGCGAGg -3'
miRNA:   3'- -GCCGGC-CGCGCGUuuuu----------CUU-CGCUUa -5'
6780 5' -53.6 NC_001875.2 + 67705 0.68 0.885426
Target:  5'- uGGCCGGCG-GCcuGAGGggGUu--- -3'
miRNA:   3'- gCCGGCCGCgCGuuUUUCuuCGcuua -5'
6780 5' -53.6 NC_001875.2 + 19949 0.68 0.885426
Target:  5'- gCGGCCGGCGCGaCGGuccGGccGGCGc-- -3'
miRNA:   3'- -GCCGGCCGCGC-GUUuuuCU--UCGCuua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.