miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6782 3' -51.4 NC_001875.2 + 11592 0.65 0.9828
Target:  5'- cGCCuacgUGAGAAccgucguuaccacuACCACAGUUUCGGaCAg- -3'
miRNA:   3'- -CGG----ACUUUU--------------UGGUGUCGGAGCC-GUau -5'
6782 3' -51.4 NC_001875.2 + 36275 0.66 0.981315
Target:  5'- cGCCUGcacaacGGAGcgccaaugcGCCGCAGCCaccucaaGGCAUAu -3'
miRNA:   3'- -CGGAC------UUUU---------UGGUGUCGGag-----CCGUAU- -5'
6782 3' -51.4 NC_001875.2 + 101027 0.66 0.976542
Target:  5'- cGCCUGGu--GgCACAGCCUaCaGCGUu -3'
miRNA:   3'- -CGGACUuuuUgGUGUCGGA-GcCGUAu -5'
6782 3' -51.4 NC_001875.2 + 130048 0.66 0.973846
Target:  5'- cGCCgacgGAAAuggcGGCgGCGGCggCGGCAUGc -3'
miRNA:   3'- -CGGa---CUUU----UUGgUGUCGgaGCCGUAU- -5'
6782 3' -51.4 NC_001875.2 + 76429 0.66 0.973846
Target:  5'- aGCCguUGAccGAUUACAGCUUCaGCAUGa -3'
miRNA:   3'- -CGG--ACUuuUUGGUGUCGGAGcCGUAU- -5'
6782 3' -51.4 NC_001875.2 + 39023 0.66 0.970931
Target:  5'- -aCUGAugcGACCGCGGCg-CGGCAc- -3'
miRNA:   3'- cgGACUuu-UUGGUGUCGgaGCCGUau -5'
6782 3' -51.4 NC_001875.2 + 74041 0.66 0.970931
Target:  5'- uGCCgcgcuAAAAACCGC-GCugCUCGGCGUGg -3'
miRNA:   3'- -CGGac---UUUUUGGUGuCG--GAGCCGUAU- -5'
6782 3' -51.4 NC_001875.2 + 127309 0.67 0.96779
Target:  5'- aCCgcAGGAACCGCAGCCggCGGUg-- -3'
miRNA:   3'- cGGacUUUUUGGUGUCGGa-GCCGuau -5'
6782 3' -51.4 NC_001875.2 + 94022 0.67 0.96779
Target:  5'- aCgUGAuc-GCCACcGCCUUGGCGUc -3'
miRNA:   3'- cGgACUuuuUGGUGuCGGAGCCGUAu -5'
6782 3' -51.4 NC_001875.2 + 99097 0.67 0.96779
Target:  5'- cGCUUGcc-AACUuaaaACAGCUUCGGCAa- -3'
miRNA:   3'- -CGGACuuuUUGG----UGUCGGAGCCGUau -5'
6782 3' -51.4 NC_001875.2 + 60464 0.67 0.966803
Target:  5'- uGCUUGAGGAGCCccaGCaaauucauugugcuAGCgUCGGCGUu -3'
miRNA:   3'- -CGGACUUUUUGG---UG--------------UCGgAGCCGUAu -5'
6782 3' -51.4 NC_001875.2 + 29151 0.67 0.964417
Target:  5'- cCCUGGccaguguaaaAGAAUC-CGGCCUCGGCc-- -3'
miRNA:   3'- cGGACU----------UUUUGGuGUCGGAGCCGuau -5'
6782 3' -51.4 NC_001875.2 + 37585 0.67 0.960803
Target:  5'- cGCCggcgcGAGcGCCGCGGCCggccgcacggCGGCGUGc -3'
miRNA:   3'- -CGGac---UUUuUGGUGUCGGa---------GCCGUAU- -5'
6782 3' -51.4 NC_001875.2 + 33532 0.67 0.956943
Target:  5'- uGCCgggcGAAAccACCACGGCgUCGGUg-- -3'
miRNA:   3'- -CGGa---CUUUu-UGGUGUCGgAGCCGuau -5'
6782 3' -51.4 NC_001875.2 + 54000 0.67 0.952831
Target:  5'- -gCUGGuc-GCgCACGGCCUUGGCGg- -3'
miRNA:   3'- cgGACUuuuUG-GUGUCGGAGCCGUau -5'
6782 3' -51.4 NC_001875.2 + 84378 0.67 0.952406
Target:  5'- gGCCUGccggggcggcgucGGuAGCCGgAGCUUCGGCGg- -3'
miRNA:   3'- -CGGAC-------------UUuUUGGUgUCGGAGCCGUau -5'
6782 3' -51.4 NC_001875.2 + 102322 0.68 0.943836
Target:  5'- cGCagacaUGAAAAacaaaGCCGCGcGUCUCGGCAc- -3'
miRNA:   3'- -CGg----ACUUUU-----UGGUGU-CGGAGCCGUau -5'
6782 3' -51.4 NC_001875.2 + 46481 0.68 0.928366
Target:  5'- uGCCaacgcGAAcgccGCCACGGCgUCGGCGUu -3'
miRNA:   3'- -CGGa----CUUuu--UGGUGUCGgAGCCGUAu -5'
6782 3' -51.4 NC_001875.2 + 92735 0.69 0.904006
Target:  5'- cGCCaUGGAgcgcgGAACUGCAGCgUUGGCAc- -3'
miRNA:   3'- -CGG-ACUU-----UUUGGUGUCGgAGCCGUau -5'
6782 3' -51.4 NC_001875.2 + 86310 0.69 0.897257
Target:  5'- uCUUGAAGGGCauuaGCAGCUUUGGCGc- -3'
miRNA:   3'- cGGACUUUUUGg---UGUCGGAGCCGUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.