miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6783 5' -49.9 NC_001875.2 + 131746 0.7 0.934157
Target:  5'- uGCAuuGGGCCGGCGGCGg-------- -3'
miRNA:   3'- gCGUu-UCCGGUCGCCGUaacaaaagu -5'
6783 5' -49.9 NC_001875.2 + 130061 0.66 0.990365
Target:  5'- gGCGgcGGCggCGGCGGCAUgcucGUggUCAc -3'
miRNA:   3'- gCGUuuCCG--GUCGCCGUAa---CAaaAGU- -5'
6783 5' -49.9 NC_001875.2 + 124769 0.71 0.890296
Target:  5'- gCGCAcAGGCCGGUGGCGUc------- -3'
miRNA:   3'- -GCGUuUCCGGUCGCCGUAacaaaagu -5'
6783 5' -49.9 NC_001875.2 + 124543 0.68 0.97429
Target:  5'- gGCGAgucgGGGUCGGCGGCGggGUc---- -3'
miRNA:   3'- gCGUU----UCCGGUCGCCGUaaCAaaagu -5'
6783 5' -49.9 NC_001875.2 + 121449 0.72 0.875389
Target:  5'- cCGCGccacGGCgCGGCGGCGUUcaaaGUUUUCGg -3'
miRNA:   3'- -GCGUuu--CCG-GUCGCCGUAA----CAAAAGU- -5'
6783 5' -49.9 NC_001875.2 + 117881 0.69 0.948897
Target:  5'- aGCGuuGGCCAGCuuaGGCuGUUGUUUg-- -3'
miRNA:   3'- gCGUuuCCGGUCG---CCG-UAACAAAagu -5'
6783 5' -49.9 NC_001875.2 + 113618 0.68 0.976976
Target:  5'- gCGCAccgaacAGGUCAGCGGCgAUUGgg--CAa -3'
miRNA:   3'- -GCGUu-----UCCGGUCGCCG-UAACaaaaGU- -5'
6783 5' -49.9 NC_001875.2 + 109994 0.67 0.987408
Target:  5'- aCGCGc-GGUCGGUGGCGUUGa----- -3'
miRNA:   3'- -GCGUuuCCGGUCGCCGUAACaaaagu -5'
6783 5' -49.9 NC_001875.2 + 107848 0.7 0.939339
Target:  5'- uCGCGggcGAGGCCAGCGGCc--------- -3'
miRNA:   3'- -GCGU---UUCCGGUCGCCGuaacaaaagu -5'
6783 5' -49.9 NC_001875.2 + 101791 0.69 0.944252
Target:  5'- uGCAAAGGCCGGCaagcaauuggccGGCGUUuacggUCGa -3'
miRNA:   3'- gCGUUUCCGGUCG------------CCGUAAcaaa-AGU- -5'
6783 5' -49.9 NC_001875.2 + 98650 0.72 0.867562
Target:  5'- gGCGAGGGCC-GCuGCAUUGUg--CAc -3'
miRNA:   3'- gCGUUUCCGGuCGcCGUAACAaaaGU- -5'
6783 5' -49.9 NC_001875.2 + 94082 0.66 0.990365
Target:  5'- gGCGcAGGuUUAGCGGCAgguugUGUUUUUu -3'
miRNA:   3'- gCGUuUCC-GGUCGCCGUa----ACAAAAGu -5'
6783 5' -49.9 NC_001875.2 + 92623 0.67 0.979449
Target:  5'- gCGCGAGcGGCUuGCGcGCGUUGUUg--- -3'
miRNA:   3'- -GCGUUU-CCGGuCGC-CGUAACAAaagu -5'
6783 5' -49.9 NC_001875.2 + 79550 1.1 0.007149
Target:  5'- gCGCAAAGGCCAGCGGCAUUGUUUUCAa -3'
miRNA:   3'- -GCGUUUCCGGUCGCCGUAACAAAAGU- -5'
6783 5' -49.9 NC_001875.2 + 75702 0.71 0.890296
Target:  5'- gGCGAGGGCaaaGGUGGCuUUG-UUUCGa -3'
miRNA:   3'- gCGUUUCCGg--UCGCCGuAACaAAAGU- -5'
6783 5' -49.9 NC_001875.2 + 73042 0.66 0.992747
Target:  5'- uGCAGcuGGGCCAacuCGGCGcUGUUUUg- -3'
miRNA:   3'- gCGUU--UCCGGUc--GCCGUaACAAAAgu -5'
6783 5' -49.9 NC_001875.2 + 68929 0.7 0.934157
Target:  5'- uGCGAGGGCCGGCcggacGGguUUGUg---- -3'
miRNA:   3'- gCGUUUCCGGUCG-----CCguAACAaaagu -5'
6783 5' -49.9 NC_001875.2 + 63447 0.66 0.988964
Target:  5'- gGCGucggcGGCCAGCcgcgaGGCGUUGgUUUCc -3'
miRNA:   3'- gCGUuu---CCGGUCG-----CCGUAACaAAAGu -5'
6783 5' -49.9 NC_001875.2 + 56449 0.74 0.742844
Target:  5'- aCGguGAGGCCGGUGGCGggguccgcgcgcgUGUUggUCAg -3'
miRNA:   3'- -GCguUUCCGGUCGCCGUa------------ACAAa-AGU- -5'
6783 5' -49.9 NC_001875.2 + 43903 0.66 0.993748
Target:  5'- uGCAGAGGCggggcguuugCGGUGGCAUcugGUaUUCc -3'
miRNA:   3'- gCGUUUCCG----------GUCGCCGUAa--CAaAAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.