Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6784 | 3' | -54.9 | NC_001875.2 | + | 77776 | 1.08 | 0.003262 |
Target: 5'- aAGGCUUCUACAACUGCGCCGACCUCGu -3' miRNA: 3'- -UCCGAAGAUGUUGACGCGGCUGGAGC- -5' |
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6784 | 3' | -54.9 | NC_001875.2 | + | 94628 | 0.76 | 0.399357 |
Target: 5'- cGGCUUgCUGCAccGCUGCGCCaggcuuuCCUCGa -3' miRNA: 3'- uCCGAA-GAUGU--UGACGCGGcu-----GGAGC- -5' |
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6784 | 3' | -54.9 | NC_001875.2 | + | 98587 | 0.74 | 0.511542 |
Target: 5'- cGGCUUUUGCAACUcggaGCGCCGcGCCgaaaCGg -3' miRNA: 3'- uCCGAAGAUGUUGA----CGCGGC-UGGa---GC- -5' |
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6784 | 3' | -54.9 | NC_001875.2 | + | 8559 | 0.73 | 0.531553 |
Target: 5'- cAGGCg-CUGCucaaauugcucgAACcggGCGCCGACCUCGa -3' miRNA: 3'- -UCCGaaGAUG------------UUGa--CGCGGCUGGAGC- -5' |
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6784 | 3' | -54.9 | NC_001875.2 | + | 119880 | 0.73 | 0.562073 |
Target: 5'- cAGuGCUUCUGCAAC-GCGCCG-CCggUCGc -3' miRNA: 3'- -UC-CGAAGAUGUUGaCGCGGCuGG--AGC- -5' |
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6784 | 3' | -54.9 | NC_001875.2 | + | 94403 | 0.72 | 0.634724 |
Target: 5'- cGGCggCUAuuuggccgcCGACUGCGCCacGGCCUCu -3' miRNA: 3'- uCCGaaGAU---------GUUGACGCGG--CUGGAGc -5' |
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6784 | 3' | -54.9 | NC_001875.2 | + | 2674 | 0.71 | 0.655582 |
Target: 5'- cGGCgcCUgggGCAACUGCGgCG-CCUCGg -3' miRNA: 3'- uCCGaaGA---UGUUGACGCgGCuGGAGC- -5' |
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6784 | 3' | -54.9 | NC_001875.2 | + | 32563 | 0.7 | 0.707226 |
Target: 5'- aGGaGCggCUGCAGCaGUGCCGcgcgcACCUCGa -3' miRNA: 3'- -UC-CGaaGAUGUUGaCGCGGC-----UGGAGC- -5' |
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6784 | 3' | -54.9 | NC_001875.2 | + | 73665 | 0.7 | 0.717394 |
Target: 5'- cGGCUgcggCUGCuGCUGCGgCGGCUgcugCGg -3' miRNA: 3'- uCCGAa---GAUGuUGACGCgGCUGGa---GC- -5' |
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6784 | 3' | -54.9 | NC_001875.2 | + | 54468 | 0.7 | 0.717394 |
Target: 5'- uGGGCUUCUccgccacguACAcCUG-GCUGACCUUGu -3' miRNA: 3'- -UCCGAAGA---------UGUuGACgCGGCUGGAGC- -5' |
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6784 | 3' | -54.9 | NC_001875.2 | + | 73626 | 0.7 | 0.727487 |
Target: 5'- cGGCUgcgGCGGCUGCGgCGGCUgcugCGg -3' miRNA: 3'- uCCGAagaUGUUGACGCgGCUGGa---GC- -5' |
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6784 | 3' | -54.9 | NC_001875.2 | + | 48297 | 0.7 | 0.727487 |
Target: 5'- uGGGCgugUUUGCGACUGCGCgacGCCUUu -3' miRNA: 3'- -UCCGa--AGAUGUUGACGCGgc-UGGAGc -5' |
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6784 | 3' | -54.9 | NC_001875.2 | + | 41477 | 0.69 | 0.757212 |
Target: 5'- cGGCgugUCUugugugguCUGCGCCGGCCggUCGg -3' miRNA: 3'- uCCGa--AGAuguu----GACGCGGCUGG--AGC- -5' |
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6784 | 3' | -54.9 | NC_001875.2 | + | 43842 | 0.69 | 0.757212 |
Target: 5'- uGGCUggCUugGcuGCUGCGCgGGCgUCGc -3' miRNA: 3'- uCCGAa-GAugU--UGACGCGgCUGgAGC- -5' |
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6784 | 3' | -54.9 | NC_001875.2 | + | 6811 | 0.69 | 0.766904 |
Target: 5'- cGGGUcgCUGaacCAGCUGCGCCG-CgUCGa -3' miRNA: 3'- -UCCGaaGAU---GUUGACGCGGCuGgAGC- -5' |
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6784 | 3' | -54.9 | NC_001875.2 | + | 111068 | 0.69 | 0.785903 |
Target: 5'- cGGCUUCUacguggACGACgccgGCGCCGugaaaACCUUu -3' miRNA: 3'- uCCGAAGA------UGUUGa---CGCGGC-----UGGAGc -5' |
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6784 | 3' | -54.9 | NC_001875.2 | + | 55709 | 0.69 | 0.804328 |
Target: 5'- cGGGCcUCUACGGCcGCGCaaauaCGGCCgagCGu -3' miRNA: 3'- -UCCGaAGAUGUUGaCGCG-----GCUGGa--GC- -5' |
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6784 | 3' | -54.9 | NC_001875.2 | + | 62420 | 0.69 | 0.804328 |
Target: 5'- uGGGCaagcgUUUGC-GCUGCGCCGGCUg-- -3' miRNA: 3'- -UCCGa----AGAUGuUGACGCGGCUGGagc -5' |
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6784 | 3' | -54.9 | NC_001875.2 | + | 5006 | 0.68 | 0.813301 |
Target: 5'- cGGCacUUgUGCAcuUUGCGCCG-CCUCGg -3' miRNA: 3'- uCCG--AAgAUGUu-GACGCGGCuGGAGC- -5' |
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6784 | 3' | -54.9 | NC_001875.2 | + | 53983 | 0.68 | 0.822104 |
Target: 5'- cAGGUUUUguugccGCAGCUggucGCGCaCGGCCUUGg -3' miRNA: 3'- -UCCGAAGa-----UGUUGA----CGCG-GCUGGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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