miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6784 3' -54.9 NC_001875.2 + 8559 0.73 0.531553
Target:  5'- cAGGCg-CUGCucaaauugcucgAACcggGCGCCGACCUCGa -3'
miRNA:   3'- -UCCGaaGAUG------------UUGa--CGCGGCUGGAGC- -5'
6784 3' -54.9 NC_001875.2 + 99271 0.66 0.92335
Target:  5'- gAGGUgcgCgcgGCAcuGCUGCaGCCGcuCCUCGg -3'
miRNA:   3'- -UCCGaa-Ga--UGU--UGACG-CGGCu-GGAGC- -5'
6784 3' -54.9 NC_001875.2 + 69230 0.66 0.91764
Target:  5'- cGGGCg---ACGcgcGCUGUGCCGACUUg- -3'
miRNA:   3'- -UCCGaagaUGU---UGACGCGGCUGGAgc -5'
6784 3' -54.9 NC_001875.2 + 64816 0.66 0.911683
Target:  5'- cGuGUUUUUGCGGCUGCGCUuGCgCUUGa -3'
miRNA:   3'- uC-CGAAGAUGUUGACGCGGcUG-GAGC- -5'
6784 3' -54.9 NC_001875.2 + 82076 0.67 0.892344
Target:  5'- gGGGCUUugcggcCUACAuACUGgGCCGcACCagCGa -3'
miRNA:   3'- -UCCGAA------GAUGU-UGACgCGGC-UGGa-GC- -5'
6784 3' -54.9 NC_001875.2 + 69572 0.67 0.892344
Target:  5'- uGGCggacCUGaCAACggGCGCUGACC-CGg -3'
miRNA:   3'- uCCGaa--GAU-GUUGa-CGCGGCUGGaGC- -5'
6784 3' -54.9 NC_001875.2 + 126788 0.67 0.892344
Target:  5'- cGGCUg-UGCaAGCUGCGgCGGCUUUGc -3'
miRNA:   3'- uCCGAagAUG-UUGACGCgGCUGGAGC- -5'
6784 3' -54.9 NC_001875.2 + 87613 0.67 0.87826
Target:  5'- cGGGUUUCUugAAC-GUGCCGAauCUUUGu -3'
miRNA:   3'- -UCCGAAGAugUUGaCGCGGCU--GGAGC- -5'
6784 3' -54.9 NC_001875.2 + 50646 0.67 0.870873
Target:  5'- uGGCaauuaaauaaugUUCUcCAGCaUGCGCUGGCCgUCGg -3'
miRNA:   3'- uCCG------------AAGAuGUUG-ACGCGGCUGG-AGC- -5'
6784 3' -54.9 NC_001875.2 + 29242 0.67 0.870873
Target:  5'- cGGCUUCcgugGCAuACUGCgggugcgcggccGCCGACCgCGc -3'
miRNA:   3'- uCCGAAGa---UGU-UGACG------------CGGCUGGaGC- -5'
6784 3' -54.9 NC_001875.2 + 111068 0.69 0.785903
Target:  5'- cGGCUUCUacguggACGACgccgGCGCCGugaaaACCUUu -3'
miRNA:   3'- uCCGAAGA------UGUUGa---CGCGGC-----UGGAGc -5'
6784 3' -54.9 NC_001875.2 + 62420 0.69 0.804328
Target:  5'- uGGGCaagcgUUUGC-GCUGCGCCGGCUg-- -3'
miRNA:   3'- -UCCGa----AGAUGuUGACGCGGCUGGagc -5'
6784 3' -54.9 NC_001875.2 + 55709 0.69 0.804328
Target:  5'- cGGGCcUCUACGGCcGCGCaaauaCGGCCgagCGu -3'
miRNA:   3'- -UCCGaAGAUGUUGaCGCG-----GCUGGa--GC- -5'
6784 3' -54.9 NC_001875.2 + 53983 0.68 0.822104
Target:  5'- cAGGUUUUguugccGCAGCUggucGCGCaCGGCCUUGg -3'
miRNA:   3'- -UCCGAAGa-----UGUUGA----CGCG-GCUGGAGC- -5'
6784 3' -54.9 NC_001875.2 + 82371 0.68 0.839162
Target:  5'- gGGGCUauuUCUGCAcaAC-GCGgCGACCgUCGc -3'
miRNA:   3'- -UCCGA---AGAUGU--UGaCGCgGCUGG-AGC- -5'
6784 3' -54.9 NC_001875.2 + 13703 0.68 0.847401
Target:  5'- cAGGCUUUgaaaAACuuUGCGCCcGCCUUGg -3'
miRNA:   3'- -UCCGAAGaug-UUG--ACGCGGcUGGAGC- -5'
6784 3' -54.9 NC_001875.2 + 90668 0.67 0.855437
Target:  5'- uGGGCgug-GCGuuGCUGCGgaUGACCUCGa -3'
miRNA:   3'- -UCCGaagaUGU--UGACGCg-GCUGGAGC- -5'
6784 3' -54.9 NC_001875.2 + 61612 0.66 0.92335
Target:  5'- cGGcGCUUCg--GGCUGUGUCGgcggcGCCUCGg -3'
miRNA:   3'- -UC-CGAAGaugUUGACGCGGC-----UGGAGC- -5'
6784 3' -54.9 NC_001875.2 + 94628 0.76 0.399357
Target:  5'- cGGCUUgCUGCAccGCUGCGCCaggcuuuCCUCGa -3'
miRNA:   3'- uCCGAA-GAUGU--UGACGCGGcu-----GGAGC- -5'
6784 3' -54.9 NC_001875.2 + 98587 0.74 0.511542
Target:  5'- cGGCUUUUGCAACUcggaGCGCCGcGCCgaaaCGg -3'
miRNA:   3'- uCCGAAGAUGUUGA----CGCGGC-UGGa---GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.