miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6784 3' -54.9 NC_001875.2 + 2371 0.67 0.863263
Target:  5'- cGGCauguuggagUCcgACAGCUGCGCCcaguGCCUCu -3'
miRNA:   3'- uCCGa--------AGa-UGUUGACGCGGc---UGGAGc -5'
6784 3' -54.9 NC_001875.2 + 2674 0.71 0.655582
Target:  5'- cGGCgcCUgggGCAACUGCGgCG-CCUCGg -3'
miRNA:   3'- uCCGaaGA---UGUUGACGCgGCuGGAGC- -5'
6784 3' -54.9 NC_001875.2 + 4925 0.66 0.905479
Target:  5'- uGGCaacUUCUugcgggGCAGCacuaacacuuUGCGCCG-CCUCGg -3'
miRNA:   3'- uCCG---AAGA------UGUUG----------ACGCGGCuGGAGC- -5'
6784 3' -54.9 NC_001875.2 + 5006 0.68 0.813301
Target:  5'- cGGCacUUgUGCAcuUUGCGCCG-CCUCGg -3'
miRNA:   3'- uCCG--AAgAUGUu-GACGCGGCuGGAGC- -5'
6784 3' -54.9 NC_001875.2 + 6811 0.69 0.766904
Target:  5'- cGGGUcgCUGaacCAGCUGCGCCG-CgUCGa -3'
miRNA:   3'- -UCCGaaGAU---GUUGACGCGGCuGgAGC- -5'
6784 3' -54.9 NC_001875.2 + 8559 0.73 0.531553
Target:  5'- cAGGCg-CUGCucaaauugcucgAACcggGCGCCGACCUCGa -3'
miRNA:   3'- -UCCGaaGAUG------------UUGa--CGCGGCUGGAGC- -5'
6784 3' -54.9 NC_001875.2 + 13703 0.68 0.847401
Target:  5'- cAGGCUUUgaaaAACuuUGCGCCcGCCUUGg -3'
miRNA:   3'- -UCCGAAGaug-UUG--ACGCGGcUGGAGC- -5'
6784 3' -54.9 NC_001875.2 + 14639 0.68 0.822104
Target:  5'- cGGCUUUcgcuuCGACgagGUGCCGGCCUg- -3'
miRNA:   3'- uCCGAAGau---GUUGa--CGCGGCUGGAgc -5'
6784 3' -54.9 NC_001875.2 + 29242 0.67 0.870873
Target:  5'- cGGCUUCcgugGCAuACUGCgggugcgcggccGCCGACCgCGc -3'
miRNA:   3'- uCCGAAGa---UGU-UGACG------------CGGCUGGaGC- -5'
6784 3' -54.9 NC_001875.2 + 32563 0.7 0.707226
Target:  5'- aGGaGCggCUGCAGCaGUGCCGcgcgcACCUCGa -3'
miRNA:   3'- -UC-CGaaGAUGUUGaCGCGGC-----UGGAGC- -5'
6784 3' -54.9 NC_001875.2 + 41477 0.69 0.757212
Target:  5'- cGGCgugUCUugugugguCUGCGCCGGCCggUCGg -3'
miRNA:   3'- uCCGa--AGAuguu----GACGCGGCUGG--AGC- -5'
6784 3' -54.9 NC_001875.2 + 43842 0.69 0.757212
Target:  5'- uGGCUggCUugGcuGCUGCGCgGGCgUCGc -3'
miRNA:   3'- uCCGAa-GAugU--UGACGCGgCUGgAGC- -5'
6784 3' -54.9 NC_001875.2 + 48297 0.7 0.727487
Target:  5'- uGGGCgugUUUGCGACUGCGCgacGCCUUu -3'
miRNA:   3'- -UCCGa--AGAUGUUGACGCGgc-UGGAGc -5'
6784 3' -54.9 NC_001875.2 + 50646 0.67 0.870873
Target:  5'- uGGCaauuaaauaaugUUCUcCAGCaUGCGCUGGCCgUCGg -3'
miRNA:   3'- uCCG------------AAGAuGUUG-ACGCGGCUGG-AGC- -5'
6784 3' -54.9 NC_001875.2 + 53983 0.68 0.822104
Target:  5'- cAGGUUUUguugccGCAGCUggucGCGCaCGGCCUUGg -3'
miRNA:   3'- -UCCGAAGa-----UGUUGA----CGCG-GCUGGAGC- -5'
6784 3' -54.9 NC_001875.2 + 54468 0.7 0.717394
Target:  5'- uGGGCUUCUccgccacguACAcCUG-GCUGACCUUGu -3'
miRNA:   3'- -UCCGAAGA---------UGUuGACgCGGCUGGAGC- -5'
6784 3' -54.9 NC_001875.2 + 55709 0.69 0.804328
Target:  5'- cGGGCcUCUACGGCcGCGCaaauaCGGCCgagCGu -3'
miRNA:   3'- -UCCGaAGAUGUUGaCGCG-----GCUGGa--GC- -5'
6784 3' -54.9 NC_001875.2 + 57691 0.67 0.870873
Target:  5'- uGGCg---GCGGCggGCGCCGcgcCCUCGa -3'
miRNA:   3'- uCCGaagaUGUUGa-CGCGGCu--GGAGC- -5'
6784 3' -54.9 NC_001875.2 + 60192 0.68 0.847401
Target:  5'- cAGcGCUUCgUugAAUUGCGCCGGCggCa -3'
miRNA:   3'- -UC-CGAAG-AugUUGACGCGGCUGgaGc -5'
6784 3' -54.9 NC_001875.2 + 61612 0.66 0.92335
Target:  5'- cGGcGCUUCg--GGCUGUGUCGgcggcGCCUCGg -3'
miRNA:   3'- -UC-CGAAGaugUUGACGCGGC-----UGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.