miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6785 5' -50.5 NC_001875.2 + 77167 1.11 0.006076
Target:  5'- aCGGCAACUUUUACUGGCCCGACAACGg -3'
miRNA:   3'- -GCCGUUGAAAAUGACCGGGCUGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 122590 0.81 0.416418
Target:  5'- uGGUAuugcgUUACUGGCCCGACGugGa -3'
miRNA:   3'- gCCGUugaa-AAUGACCGGGCUGUugC- -5'
6785 5' -50.5 NC_001875.2 + 119443 0.77 0.639984
Target:  5'- gCGGCAAaca--GC-GGCCCGACGACGa -3'
miRNA:   3'- -GCCGUUgaaaaUGaCCGGGCUGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 50724 0.75 0.714189
Target:  5'- cCGGCGACUacugUUACUGGCCCaACuggcccGCGu -3'
miRNA:   3'- -GCCGUUGAa---AAUGACCGGGcUGu-----UGC- -5'
6785 5' -50.5 NC_001875.2 + 90011 0.75 0.724566
Target:  5'- gCGGCAACUggacgcgcaACUGGCCgCGGCGcCGg -3'
miRNA:   3'- -GCCGUUGAaaa------UGACCGG-GCUGUuGC- -5'
6785 5' -50.5 NC_001875.2 + 61590 0.75 0.745048
Target:  5'- gCGGCGACg---GCUcgGGCgCCGGCGGCGc -3'
miRNA:   3'- -GCCGUUGaaaaUGA--CCG-GGCUGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 19921 0.74 0.774933
Target:  5'- aCGGCAGCUgc-ACcGGCCCGuACAcggaGCGg -3'
miRNA:   3'- -GCCGUUGAaaaUGaCCGGGC-UGU----UGC- -5'
6785 5' -50.5 NC_001875.2 + 73793 0.74 0.794176
Target:  5'- gCGGCGGCg---GCUGGaaCGGCAGCGc -3'
miRNA:   3'- -GCCGUUGaaaaUGACCggGCUGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 1621 0.73 0.839315
Target:  5'- cCGGCAAagaacgcGCUGuGCCCGACAcGCGa -3'
miRNA:   3'- -GCCGUUgaaaa--UGAC-CGGGCUGU-UGC- -5'
6785 5' -50.5 NC_001875.2 + 69231 0.72 0.855991
Target:  5'- gGGCGACgcgcGCUGugccgacuuGCCCGACGGCa -3'
miRNA:   3'- gCCGUUGaaaaUGAC---------CGGGCUGUUGc -5'
6785 5' -50.5 NC_001875.2 + 31542 0.72 0.860823
Target:  5'- aCGGCAccACUUgcACgcgcugcagguugGGCCCGGCGGCu -3'
miRNA:   3'- -GCCGU--UGAAaaUGa------------CCGGGCUGUUGc -5'
6785 5' -50.5 NC_001875.2 + 94682 0.72 0.879326
Target:  5'- gCGGC-ACgggUGCUGGaaCCCGGCGAUGc -3'
miRNA:   3'- -GCCGuUGaaaAUGACC--GGGCUGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 7088 0.71 0.886631
Target:  5'- gCGGCAGCUacUACgugcgcGGCUCGgACGGCGg -3'
miRNA:   3'- -GCCGUUGAaaAUGa-----CCGGGC-UGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 82855 0.71 0.900498
Target:  5'- gGGCGACUUggGCaguucgGcGCCCGACucuGCGu -3'
miRNA:   3'- gCCGUUGAAaaUGa-----C-CGGGCUGu--UGC- -5'
6785 5' -50.5 NC_001875.2 + 76567 0.7 0.919386
Target:  5'- aGGCcACggacuUUGuGCCCGGCAACGg -3'
miRNA:   3'- gCCGuUGaaaauGAC-CGGGCUGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 102741 0.7 0.925163
Target:  5'- aCGGCGGuCUgaaggAUUGGgaaCCCGACGACGc -3'
miRNA:   3'- -GCCGUU-GAaaa--UGACC---GGGCUGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 91875 0.7 0.930678
Target:  5'- gGGCGcCU---GCUGGUgCGGCGGCGg -3'
miRNA:   3'- gCCGUuGAaaaUGACCGgGCUGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 37613 0.7 0.935931
Target:  5'- aCGGCGGCg--UGCUcGCCgaCGACAugGg -3'
miRNA:   3'- -GCCGUUGaaaAUGAcCGG--GCUGUugC- -5'
6785 5' -50.5 NC_001875.2 + 54575 0.7 0.935931
Target:  5'- gCGGCGGCc---GCUucGCCCGGCGGCGc -3'
miRNA:   3'- -GCCGUUGaaaaUGAc-CGGGCUGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 39647 0.7 0.940925
Target:  5'- uGGCGGCgUUUGCgcaaUGGCCCGugGc-- -3'
miRNA:   3'- gCCGUUGaAAAUG----ACCGGGCugUugc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.