miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6785 5' -50.5 NC_001875.2 + 1621 0.73 0.839315
Target:  5'- cCGGCAAagaacgcGCUGuGCCCGACAcGCGa -3'
miRNA:   3'- -GCCGUUgaaaa--UGAC-CGGGCUGU-UGC- -5'
6785 5' -50.5 NC_001875.2 + 2370 0.66 0.991575
Target:  5'- gCGGCAugUUg----GaGUCCGACAGCu -3'
miRNA:   3'- -GCCGUugAAaaugaC-CGGGCUGUUGc -5'
6785 5' -50.5 NC_001875.2 + 7088 0.71 0.886631
Target:  5'- gCGGCAGCUacUACgugcgcGGCUCGgACGGCGg -3'
miRNA:   3'- -GCCGUUGAaaAUGa-----CCGGGC-UGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 10446 0.67 0.983913
Target:  5'- -aGCAGCUUUgACgcGGCgCGGCGGCGc -3'
miRNA:   3'- gcCGUUGAAAaUGa-CCGgGCUGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 11961 0.68 0.974674
Target:  5'- cCGGCGGCgcgUUGCaaaGCaCUGGCGACGg -3'
miRNA:   3'- -GCCGUUGaa-AAUGac-CG-GGCUGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 12344 0.66 0.988963
Target:  5'- aGGuCGugUUUgacgGCUucgccaaGCCCGACGACGa -3'
miRNA:   3'- gCC-GUugAAAa---UGAc------CGGGCUGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 14055 0.66 0.993672
Target:  5'- uCGuCAACUUUUGCgucGCCaaCGGCGACGg -3'
miRNA:   3'- -GCcGUUGAAAAUGac-CGG--GCUGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 17612 0.69 0.950137
Target:  5'- gCGcCAGCUgagcaagUUGCUGGCCgGACA-CGg -3'
miRNA:   3'- -GCcGUUGAa------AAUGACCGGgCUGUuGC- -5'
6785 5' -50.5 NC_001875.2 + 17938 0.66 0.993672
Target:  5'- cCGGCuauGACgagUUuuUGuGCCCGGCAGCc -3'
miRNA:   3'- -GCCG---UUGaa-AAugAC-CGGGCUGUUGc -5'
6785 5' -50.5 NC_001875.2 + 19921 0.74 0.774933
Target:  5'- aCGGCAGCUgc-ACcGGCCCGuACAcggaGCGg -3'
miRNA:   3'- -GCCGUUGAaaaUGaCCGGGC-UGU----UGC- -5'
6785 5' -50.5 NC_001875.2 + 22807 0.67 0.979682
Target:  5'- cCGGUAuCUggccgUGC-GGUCCGACGGCa -3'
miRNA:   3'- -GCCGUuGAaa---AUGaCCGGGCUGUUGc -5'
6785 5' -50.5 NC_001875.2 + 25996 0.67 0.983913
Target:  5'- aCGGCGGCUc--GCUGGaCCCcaACAGCc -3'
miRNA:   3'- -GCCGUUGAaaaUGACC-GGGc-UGUUGc -5'
6785 5' -50.5 NC_001875.2 + 27877 0.68 0.965563
Target:  5'- gCGGUAuugcggucguucGCcg-UGCUGGCCauCGGCGACGa -3'
miRNA:   3'- -GCCGU------------UGaaaAUGACCGG--GCUGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 29198 0.67 0.98744
Target:  5'- aGGCAACUU----UGGCCaguuGAUGGCGg -3'
miRNA:   3'- gCCGUUGAAaaugACCGGg---CUGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 31542 0.72 0.860823
Target:  5'- aCGGCAccACUUgcACgcgcugcagguugGGCCCGGCGGCu -3'
miRNA:   3'- -GCCGU--UGAAaaUGa------------CCGGGCUGUUGc -5'
6785 5' -50.5 NC_001875.2 + 31716 0.68 0.974674
Target:  5'- cCGGCGcauuACUUUcgGCgaaguUGGCCCG-CGGCGu -3'
miRNA:   3'- -GCCGU----UGAAAa-UG-----ACCGGGCuGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 33667 0.66 0.990338
Target:  5'- uCGGCGGCguggUAaaacaaacGGCCCGACGuGCGc -3'
miRNA:   3'- -GCCGUUGaaa-AUga------CCGGGCUGU-UGC- -5'
6785 5' -50.5 NC_001875.2 + 37613 0.7 0.935931
Target:  5'- aCGGCGGCg--UGCUcGCCgaCGACAugGg -3'
miRNA:   3'- -GCCGUUGaaaAUGAcCGG--GCUGUugC- -5'
6785 5' -50.5 NC_001875.2 + 37894 0.66 0.990338
Target:  5'- -aGCGGCU--UGCUGGCgCGGCAcugGCa -3'
miRNA:   3'- gcCGUUGAaaAUGACCGgGCUGU---UGc -5'
6785 5' -50.5 NC_001875.2 + 39040 0.68 0.965225
Target:  5'- gCGGCAcguuacgcuguaaGCUgcccgauUUGGCUCGACAAUGg -3'
miRNA:   3'- -GCCGU-------------UGAaaau---GACCGGGCUGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.