miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6785 5' -50.5 NC_001875.2 + 110645 0.67 0.985759
Target:  5'- uGGUGGC----GCUGGCCgugccgcgCGACGACGa -3'
miRNA:   3'- gCCGUUGaaaaUGACCGG--------GCUGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 11961 0.68 0.974674
Target:  5'- cCGGCGGCgcgUUGCaaaGCaCUGGCGACGg -3'
miRNA:   3'- -GCCGUUGaa-AAUGac-CG-GGCUGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 31716 0.68 0.974674
Target:  5'- cCGGCGcauuACUUUcgGCgaaguUGGCCCG-CGGCGu -3'
miRNA:   3'- -GCCGU----UGAAAa-UG-----ACCGGGCuGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 75271 0.68 0.977279
Target:  5'- gCGGCGGCgucgGCgaUGGCgUCGGCGAUGg -3'
miRNA:   3'- -GCCGUUGaaaaUG--ACCG-GGCUGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 22807 0.67 0.979682
Target:  5'- cCGGUAuCUggccgUGC-GGUCCGACGGCa -3'
miRNA:   3'- -GCCGUuGAaa---AUGaCCGGGCUGUUGc -5'
6785 5' -50.5 NC_001875.2 + 64554 0.67 0.979682
Target:  5'- aCGGCuugg--UGCUGGC-CGGCGACu -3'
miRNA:   3'- -GCCGuugaaaAUGACCGgGCUGUUGc -5'
6785 5' -50.5 NC_001875.2 + 118666 0.67 0.983913
Target:  5'- uCGGCAACUaccuggACUGcaacuuucgcguGCUCGACGAUGc -3'
miRNA:   3'- -GCCGUUGAaaa---UGAC------------CGGGCUGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 10446 0.67 0.983913
Target:  5'- -aGCAGCUUUgACgcGGCgCGGCGGCGc -3'
miRNA:   3'- gcCGUUGAAAaUGa-CCGgGCUGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 81721 0.67 0.983913
Target:  5'- cCGaGCGACUguuuaUUAUUGcGCCCGAaAACGu -3'
miRNA:   3'- -GC-CGUUGAa----AAUGAC-CGGGCUgUUGC- -5'
6785 5' -50.5 NC_001875.2 + 122025 0.68 0.968824
Target:  5'- gGGUAGC----ACUGGUCCGGCccAACGu -3'
miRNA:   3'- gCCGUUGaaaaUGACCGGGCUG--UUGC- -5'
6785 5' -50.5 NC_001875.2 + 27877 0.68 0.965563
Target:  5'- gCGGUAuugcggucguucGCcg-UGCUGGCCauCGGCGACGa -3'
miRNA:   3'- -GCCGU------------UGaaaAUGACCGG--GCUGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 102111 0.68 0.965563
Target:  5'- gGGCcGCUacgccUUGGCCCGugAGCa -3'
miRNA:   3'- gCCGuUGAaaau-GACCGGGCugUUGc -5'
6785 5' -50.5 NC_001875.2 + 69231 0.72 0.855991
Target:  5'- gGGCGACgcgcGCUGugccgacuuGCCCGACGGCa -3'
miRNA:   3'- gCCGUUGaaaaUGAC---------CGGGCUGUUGc -5'
6785 5' -50.5 NC_001875.2 + 82855 0.71 0.900498
Target:  5'- gGGCGACUUggGCaguucgGcGCCCGACucuGCGu -3'
miRNA:   3'- gCCGUUGAAaaUGa-----C-CGGGCUGu--UGC- -5'
6785 5' -50.5 NC_001875.2 + 54575 0.7 0.935931
Target:  5'- gCGGCGGCc---GCUucGCCCGGCGGCGc -3'
miRNA:   3'- -GCCGUUGaaaaUGAc-CGGGCUGUUGC- -5'
6785 5' -50.5 NC_001875.2 + 37613 0.7 0.935931
Target:  5'- aCGGCGGCg--UGCUcGCCgaCGACAugGg -3'
miRNA:   3'- -GCCGUUGaaaAUGAcCGG--GCUGUugC- -5'
6785 5' -50.5 NC_001875.2 + 67230 0.69 0.945659
Target:  5'- gGGCGcaaACg---GgUGGCCCGACuGCGa -3'
miRNA:   3'- gCCGU---UGaaaaUgACCGGGCUGuUGC- -5'
6785 5' -50.5 NC_001875.2 + 17612 0.69 0.950137
Target:  5'- gCGcCAGCUgagcaagUUGCUGGCCgGACA-CGg -3'
miRNA:   3'- -GCcGUUGAa------AAUGACCGGgCUGUuGC- -5'
6785 5' -50.5 NC_001875.2 + 50866 0.69 0.954362
Target:  5'- -aGCAGCUUUUGCUcgggcGGCgCGGCcACGa -3'
miRNA:   3'- gcCGUUGAAAAUGA-----CCGgGCUGuUGC- -5'
6785 5' -50.5 NC_001875.2 + 66660 0.68 0.965563
Target:  5'- uGGcCAGCU---GCUGGUCgaaCGGCAGCGg -3'
miRNA:   3'- gCC-GUUGAaaaUGACCGG---GCUGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.