miRNA display CGI


Results 1 - 20 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6786 5' -55.3 NC_001875.2 + 75543 1.11 0.002041
Target:  5'- cGCCAUACGCUUGGGCGCCAUCGACGAa -3'
miRNA:   3'- -CGGUAUGCGAACCCGCGGUAGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 17833 0.82 0.184169
Target:  5'- cGCCAUGCGCgaGGGCGCCgaaaacgaggugcaGUCGGcCGAg -3'
miRNA:   3'- -CGGUAUGCGaaCCCGCGG--------------UAGCU-GCU- -5'
6786 5' -55.3 NC_001875.2 + 100882 0.75 0.431462
Target:  5'- cGCagcGCGCgcgUGGGCGCCAU-GGCGAg -3'
miRNA:   3'- -CGguaUGCGa--ACCCGCGGUAgCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 79114 0.73 0.566985
Target:  5'- gGCCAcgGCGUUgucggcggcGGGCGCCG-CGGCGGg -3'
miRNA:   3'- -CGGUa-UGCGAa--------CCCGCGGUaGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 84400 0.72 0.591554
Target:  5'- aGCCGgagcuucggcggcgGCGCguauaGGUGCCAUCGGCGGa -3'
miRNA:   3'- -CGGUa-------------UGCGaac--CCGCGGUAGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 125343 0.72 0.597727
Target:  5'- gGCCAgcguguugGCGCggcacuccgcgUUGGGCGCCGUaaucgaccUGACGAa -3'
miRNA:   3'- -CGGUa-------UGCG-----------AACCCGCGGUA--------GCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 7376 0.72 0.608036
Target:  5'- aGCCGUACaGCcUGGGCGaucuaAUUGGCGAc -3'
miRNA:   3'- -CGGUAUG-CGaACCCGCgg---UAGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 18282 0.72 0.608036
Target:  5'- cGCCGUGCGCgaccGCGCCGUUGAUu- -3'
miRNA:   3'- -CGGUAUGCGaaccCGCGGUAGCUGcu -5'
6786 5' -55.3 NC_001875.2 + 20023 0.72 0.626632
Target:  5'- aGCCGUcACGCggagcagccaGGCGCCGUCGGCc- -3'
miRNA:   3'- -CGGUA-UGCGaac-------CCGCGGUAGCUGcu -5'
6786 5' -55.3 NC_001875.2 + 57134 0.71 0.680262
Target:  5'- cGUgGUGuagUGCgUGGGCGCCAaCGGCGGg -3'
miRNA:   3'- -CGgUAU---GCGaACCCGCGGUaGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 19865 0.71 0.680262
Target:  5'- gGCCGcguCGCggcgcGGGCGCCGUUuGCGAa -3'
miRNA:   3'- -CGGUau-GCGaa---CCCGCGGUAGcUGCU- -5'
6786 5' -55.3 NC_001875.2 + 108103 0.71 0.690488
Target:  5'- -aCAaGCGUUacagGGGCGUgAUCGACGAa -3'
miRNA:   3'- cgGUaUGCGAa---CCCGCGgUAGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 1039 0.7 0.700665
Target:  5'- gGCCcgagGCGCacagcgUUGGGCGCaaCGUUGGCGAc -3'
miRNA:   3'- -CGGua--UGCG------AACCCGCG--GUAGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 41435 0.7 0.717826
Target:  5'- cCCAUgagcgugauaaacaACGCguuuaGCGCCAUCGACGAg -3'
miRNA:   3'- cGGUA--------------UGCGaacc-CGCGGUAGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 82239 0.7 0.730805
Target:  5'- aGCCGcuUGCGCgcuggUGGuaGCGCuCGUCGGCGc -3'
miRNA:   3'- -CGGU--AUGCGa----ACC--CGCG-GUAGCUGCu -5'
6786 5' -55.3 NC_001875.2 + 125851 0.7 0.739706
Target:  5'- cCCAUucggcacGCGC-UGGGCcugcCCGUCGGCGAc -3'
miRNA:   3'- cGGUA-------UGCGaACCCGc---GGUAGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 61606 0.7 0.74069
Target:  5'- cGCCGgcgGCGCUUcGGGCugUGUCGGCGGc -3'
miRNA:   3'- -CGGUa--UGCGAA-CCCGcgGUAGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 108037 0.7 0.74069
Target:  5'- cGCCcgACGCcgcGGaGCGacaCGUCGGCGAc -3'
miRNA:   3'- -CGGuaUGCGaa-CC-CGCg--GUAGCUGCU- -5'
6786 5' -55.3 NC_001875.2 + 4681 0.69 0.76016
Target:  5'- uCCAcaaUGCGCUcGGGCGCCGUaaaaaGAgGGc -3'
miRNA:   3'- cGGU---AUGCGAaCCCGCGGUAg----CUgCU- -5'
6786 5' -55.3 NC_001875.2 + 57297 0.69 0.76016
Target:  5'- uCCA-ACGCgaacGGGCGCgcguCGUCGGCGAc -3'
miRNA:   3'- cGGUaUGCGaa--CCCGCG----GUAGCUGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.